PI0021628 (gene) Melon (PI 482460) v1

Overview


Name	PI0021628
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr06: 14691390 .. 14691899 (-)
RNA-Seq Expression	PI0021628
Synteny	PI0021628

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGATAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTCGATGTTGATCCTGAGTCAGATGCAGAACCAATGTGCGTTGAAGAAGAAATGGTTGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGACGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTTCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGTGTTCGTAAGCACGATCCAATTATAGTCCCAGTGGTGACGGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCGATGTAAGAAGTCGGATGAAGGTTGCAGATAG

mRNA sequence

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGATAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTCGATGTTGATCCTGAGTCAGATGCAGAACCAATGTGCGTTGAAGAAGAAATGGTTGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGACGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTTCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGTGTTCGTAAGCACGATCCAATTATAGTCCCAGTGGTGACGGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCGATGTAAGAAGTCGGATGAAGGTTGCAGATAG

Coding sequence (CDS)

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGATAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTCGATGTTGATCCTGAGTCAGATGCAGAACCAATGTGCGTTGAAGAAGAAATGGTTGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGACGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTTCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGTGTTCGTAAGCACGATCCAATTATAGTCCCAGTGGTGACGGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCGATGTAAGAAGTCGGATGAAGGTTGCAGATAG

Protein sequence

MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVANNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTELYKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR

Homology

[Close]

BLAST of PI0021628 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.8e-72
Identity = 135/169 (79.88%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA P+C EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD++++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 135/169 (79.88%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA P+C EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.8e-69
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIAL FPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA  +C EEEMVA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSI LPF NMVHLYVTVS +D  I+LNVE R VEEYVDV+PES+A P+C EEEMVA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SN FTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +DL I+LNVE + VEEYVDVD ESDA P+C EEEMVA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++ DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVI+CKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

[Close]

BLAST of PI0021628 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 7.8e-72
Identity = 135/169 (79.88%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA P+C EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD++++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 3.0e-71
Identity = 135/169 (79.88%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA P+C EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-69
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIAL FPNMVHLYVTVS +D  I+LNVE R VEEYVDV+PESDA  +C EEEMVA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 6.2e-69
Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSI LPF NMVHLYVTVS +D  I+LNVE R VEEYVDV+PES+A P+C EEEMVA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SN FTDLDMNAVD +++HDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVESTPTKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0021628 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.7e-66
Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRIDLGIDLNVESRPVEEYVDVDPESDAEPMCVEEEMVA 60
           MNTMFSIALPFPNMVHLYVTVS +DL I+LNVE + VEEYVDVD ESDA P+C EEEMVA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFSSNTFTDLDMNAVDSVRKHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E  SNTFTDLDMNAVD +++ DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVI+CKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

The following BLAST results are available for this feature:

BLAST of PI0021628 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SS31	3.8e-72	79.88	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	1.4e-71	79.88	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T1X8	1.8e-69	78.70	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DIM2	3.0e-69	77.51	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3DHR2	1.8e-66	78.31	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0021628 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034014.1	7.8e-72	79.88	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	3.0e-71	79.88	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0036768.1	3.6e-69	78.70	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
KAA0040476.1	6.2e-69	77.51	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK23115.1	3.7e-66	78.31	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0021628 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 119..168 e-value: 5.4E-5 score: 23.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021628.1	PI0021628.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding