PI0021410 (gene) Melon (PI 482460) v1

Overview


Name	PI0021410
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	chr07: 191858 .. 193125 (+)
RNA-Seq Expression	PI0021410
Synteny	PI0021410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTCATACCCTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATAACATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATGTCCAAATTACTCATAGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGGCTCTGATTCTAGTGACTTCAATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATATTAAATTTGCTCTGCCTTATGGGGAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATATTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTATCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTTCGTTTTATAGAGATCCAAAACACTTGAAGTGAGAGTTCATTATAACATAATTTCCTATTCTTTTAATCTCAAACTATACTATCCTTATCATATTTCCTTTTTCAATGTTATACAGGTTATCCGGATTATCCCGTTTCAGAATTTACCATATACAAATTTAACCGCCAGGTTTGAATTATGGTTTGAATTATGGAACTTGAAGGGTGTGTTTGGAATGCATTTTCAAGTGTTTAATTTAAAAAATAAATCATTTTAGAAAAACAATAGCCTTTTGAGAGGACTATATCTCTCCAACAATCTACGAAATACCTTACGACCTCCGCTCATGAACCCTAACTCTCTCTATTTTACAACCAAGACCGCTAGCTAATTACCAATATATACCTTACCAATATCCTACTAATATTTCCGATGTATCTCCCAATAATACTCTCATAGATAGTCTGGAAAATTGATTTGATTCACACTAAGTTAAATGTTGAATGAACATGGACCATGACCGTGAAACAATCCGGCGGTGTTCTATCGCTGAATATCACAGTTTGTTCACTTATATTGCATATTCTGAAACAAGATGAGATGACAAAGAAACTAAATAGAAATTGTAGAATATATACGACTTTTGGGAGGCAATGTTTGCCTTTTCTAGAGTAACTTTAAGCTTGGTTTAGAATGTGTTTCATACTTGATAATCAATCATTCAAACTATCCTCAAGTTAGGCAATTGGTAATAAAAAATTACTAATTTTACATGCATTGGAATTTTACCTACTAATTAGCAATAACCCATTTGGCTTTTGATTTTGTTTGTGAATTTTTCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAA

mRNA sequence

ATGGCAGGTCATACCCTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATAACATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATGTCCAAATTACTCATAGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGGCTCTGATTCTAGTGACTTCAATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATATTAAATTTGCTCTGCCTTATGGGGAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATATTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTATCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTATCCGGATTATCCCGTTTCAGAATTTACCATATACAAATTTAACCGCCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAA

Coding sequence (CDS)

ATGGCAGGTCATACCCTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATAACATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATGTCCAAATTACTCATAGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGGCTCTGATTCTAGTGACTTCAATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATATTAAATTTGCTCTGCCTTATGGGGAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATATTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTATCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTATCCGGATTATCCCGTTTCAGAATTTACCATATACAAATTTAACCGCCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAA

Protein sequence

MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGVIIFAGKPLILVIRIIPFQNLPYTNLTARPNSEVLRGGKGI

Homology

[Close]

BLAST of PI0021410 vs. ExPASy Swiss-Prot
Match: Q0WPN7 (Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGS 60
           + G   CT+EVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL +E++ EAWGVEPY  
Sbjct: 63  ITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLL-NEEETEAWGVEPYDV 122

Query: 61  DSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVS 120
           + +D NC  L+HKG++RVADIKF LPY   SFS VI+SD L+Y S RYLN T+ EL RV+
Sbjct: 123 EDADSNCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPRYLNKTVPELARVA 182

Query: 121 REGVIIFAGKP 132
            +GV++ AG P
Sbjct: 183 SDGVVLLAGNP 192

[Close]

BLAST of PI0021410 vs. ExPASy Swiss-Prot
Match: Q9M2Y6 (Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGS 60
           + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  
Sbjct: 66  VTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL-KEEETEAWGVEPYDI 125

Query: 61  DSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVS 120
           + +D +C   + KG++RVADIKF LPY   SFS VI+SD L+Y S +YLN T+ EL RV+
Sbjct: 126 EDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVA 185

Query: 121 REGVIIFAGKP 132
            +GV++FAG P
Sbjct: 186 SDGVVLFAGLP 195

[Close]

BLAST of PI0021410 vs. ExPASy TrEMBL
Match: A0A0A0L156 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179070 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.1e-76
Identity = 150/176 (85.23%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYG 60
           MAGHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY 
Sbjct: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60

Query: 61  SDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            DSS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISDTLEYFSSRYLNSTIFELMRV
Sbjct: 61  FDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120

Query: 121 SREGVIIFAGKPLIL-----------VIRIIPFQNLPYTNLTARPNSEVLRGGKGI 165
           SREGVIIFAGKPLIL           VIRII FQNLP TNLT RPNSEVLRGGKGI
Sbjct: 121 SREGVIIFAGKPLILVSFYRYPKHLEVIRIIQFQNLPDTNLTMRPNSEVLRGGKGI 176

[Close]

BLAST of PI0021410 vs. ExPASy TrEMBL
Match: A0A5D3E063 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00250 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.4e-65
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYG 60
           MAGHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYG
Sbjct: 1   MAGHTFCTSEVQTTIPLLREVYDDSMTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYG 60

Query: 61  SDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
           SDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV
Sbjct: 61  SDSSYFNCWDLIHKGIIRVADVKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV 120

Query: 121 SREGVIIFAGKP 132
           SREGVIIFAG P
Sbjct: 121 SREGVIIFAGYP 132

[Close]

BLAST of PI0021410 vs. ExPASy TrEMBL
Match: A0A1S3BYV5 (uncharacterized protein At3g49720-like OS=Cucumis melo OX=3656 GN=LOC103494900 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.2e-64
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSD 62
           GHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSD
Sbjct: 81  GHTFCTSEVQTTIPLLREVYDDSMTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYGSD 140

Query: 63  SSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 141 SSYFNCWDLIHKGIIRVADVKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 200

Query: 123 EGVIIFAGKP 132
           EGVIIFAG P
Sbjct: 201 EGVIIFAGYP 210

[Close]

BLAST of PI0021410 vs. ExPASy TrEMBL
Match: A0A5A7TLX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00230 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 26  MTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFA 85
           MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFA
Sbjct: 1   MTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYGSDSSYFNCWDLIHKGIIRVADVKFA 60

Query: 86  LPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGVIIFAGKP 132
           LPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGVIIFAG P
Sbjct: 61  LPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGVIIFAGYP 107

[Close]

BLAST of PI0021410 vs. ExPASy TrEMBL
Match: A0A6J1D594 (uncharacterized protein At3g49720-like OS=Momordica charantia OX=3673 GN=LOC111017728 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDS 62
           GH  CT EV+ T+PLLREVYDD M KVLYVGPDTCS++S  L DE+DYEAWGV+P+G D+
Sbjct: 80  GHGFCTPEVEITMPLLREVYDDIMNKVLYVGPDTCSLVSGFL-DEEDYEAWGVDPFGFDA 139

Query: 63  SDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSRE 122
           +D +C DL+ +GI+RVADIKF LPY ++SFSHV++SDTLEY SSRYLNST+ EL RVS E
Sbjct: 140 NDSDCRDLVQQGIVRVADIKFPLPYRDSSFSHVVVSDTLEYLSSRYLNSTLAELTRVSSE 199

Query: 123 GVIIFAGKP 132
           GVII+AG P
Sbjct: 200 GVIIYAGYP 207

[Close]

BLAST of PI0021410 vs. NCBI nr
Match: TYK29433.1 (uncharacterized protein E5676_scaffold655G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYG 60
           MAGHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYG
Sbjct: 1   MAGHTFCTSEVQTTIPLLREVYDDSMTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYG 60

Query: 61  SDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
           SDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV
Sbjct: 61  SDSSYFNCWDLIHKGIIRVADVKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRV 120

Query: 121 SREGVIIFAGKP 132
           SREGVIIFAG P
Sbjct: 121 SREGVIIFAGYP 132

[Close]

BLAST of PI0021410 vs. NCBI nr
Match: XP_008454502.1 (PREDICTED: uncharacterized protein At3g49720-like [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSD 62
           GHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSD
Sbjct: 81  GHTFCTSEVQTTIPLLREVYDDSMTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYGSD 140

Query: 63  SSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 141 SSYFNCWDLIHKGIIRVADVKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 200

Query: 123 EGVIIFAGKP 132
           EGVIIFAG P
Sbjct: 201 EGVIIFAGYP 210

[Close]

BLAST of PI0021410 vs. NCBI nr
Match: XP_011654354.1 (probable pectin methylesterase CGR3 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSD 62
           GHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY  D
Sbjct: 81  GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDFD 140

Query: 63  SSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 141 SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 200

Query: 123 EGVIIFAGKP 132
           EGVIIFAG P
Sbjct: 201 EGVIIFAGHP 210

[Close]

BLAST of PI0021410 vs. NCBI nr
Match: KAE8649381.1 (hypothetical protein Csa_011838 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSD 62
           GHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY  D
Sbjct: 9   GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDFD 68

Query: 63  SSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 69  SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 128

Query: 123 EGVIIFAGKP 132
           EGVIIFAG P
Sbjct: 129 EGVIIFAGHP 138

[Close]

BLAST of PI0021410 vs. NCBI nr
Match: XP_038905892.1 (probable pectin methylesterase CGR3 [Benincasa hispida])

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-57
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 3   GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDS 62
           G T C+ EVQT IPLLREVYDD+MTKVLYVGPDTCSMMS+LLIDE++YEAWGVEPYGSD 
Sbjct: 79  GQTFCSLEVQTMIPLLREVYDDSMTKVLYVGPDTCSMMSELLIDEEEYEAWGVEPYGSDG 138

Query: 63  SDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSRE 122
           SDF CWDLIHKGIIRVAD+KF+LPY ENSFSHVIISDTLEYFS RYLNSTI ELMRVSR+
Sbjct: 139 SDFYCWDLIHKGIIRVADMKFSLPYRENSFSHVIISDTLEYFSPRYLNSTIPELMRVSRD 198

Query: 123 GVIIFAGKP 132
           GVIIFAG P
Sbjct: 199 GVIIFAGYP 207

[Close]

BLAST of PI0021410 vs. TAIR 10
Match: AT5G65810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGS 60
           + G   CT+EVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL +E++ EAWGVEPY  
Sbjct: 63  ITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLL-NEEETEAWGVEPYDV 122

Query: 61  DSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVS 120
           + +D NC  L+HKG++RVADIKF LPY   SFS VI+SD L+Y S RYLN T+ EL RV+
Sbjct: 123 EDADSNCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPRYLNKTVPELARVA 182

Query: 121 REGVIIFAGKP 132
            +GV++ AG P
Sbjct: 183 SDGVVLLAGNP 192

[Close]

BLAST of PI0021410 vs. TAIR 10
Match: AT3G49720.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 154.1 bits (388), Expect = 9.9e-38
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGS 60
           + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  
Sbjct: 66  VTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL-KEEETEAWGVEPYDI 125

Query: 61  DSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVS 120
           + +D +C   + KG++RVADIKF LPY   SFS VI+SD L+Y S +YLN T+ EL RV+
Sbjct: 126 EDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVA 185

Query: 121 REGVIIFAGKP 132
            +GV++FAG P
Sbjct: 186 SDGVVLFAGLP 195

[Close]

BLAST of PI0021410 vs. TAIR 10
Match: AT3G49720.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 154.1 bits (388), Expect = 9.9e-38
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGS 60
           + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  
Sbjct: 66  VTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL-KEEETEAWGVEPYDI 125

Query: 61  DSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVS 120
           + +D +C   + KG++RVADIKF LPY   SFS VI+SD L+Y S +YLN T+ EL RV+
Sbjct: 126 EDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVA 185

Query: 121 REGVIIFAGKP 132
            +GV++FAG P
Sbjct: 186 SDGVVLFAGLP 195

The following BLAST results are available for this feature:

BLAST of PI0021410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WPN7	2.0e-38	56.49	Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2...	[more]
Q9M2Y6	1.4e-36	54.96	Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2...	[more]

BLAST of PI0021410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L156	7.1e-76	85.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179070 PE=4 SV=1	[more]
A0A5D3E063	7.4e-65	93.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BYV5	8.2e-64	93.85	uncharacterized protein At3g49720-like OS=Cucumis melo OX=3656 GN=LOC103494900 P...	[more]
A0A5A7TLX1	1.8e-50	94.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1D594	1.0e-45	69.77	uncharacterized protein At3g49720-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of PI0021410 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29433.1	1.5e-64	93.94	uncharacterized protein E5676_scaffold655G00250 [Cucumis melo var. makuwa]	[more]
XP_008454502.1	1.7e-63	93.85	PREDICTED: uncharacterized protein At3g49720-like [Cucumis melo]	[more]
XP_011654354.1	1.1e-59	90.00	probable pectin methylesterase CGR3 [Cucumis sativus]	[more]
KAE8649381.1	1.1e-59	90.00	hypothetical protein Csa_011838 [Cucumis sativus]	[more]
XP_038905892.1	1.4e-57	86.05	probable pectin methylesterase CGR3 [Benincasa hispida]	[more]

BLAST of PI0021410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65810.1	1.4e-39	56.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G49720.1	9.9e-38	54.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G49720.2	9.9e-38	54.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044689	Pectin methyltransferase CGR2/3	PANTHER	PTHR34208	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 3..131
None	No IPR available	PANTHER	PTHR34208:SF10	PECTIN METHYLESTERASE CGR3-RELATED	coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021410.1	PI0021410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045488	pectin metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008168	methyltransferase activity