PI0021365 (gene) Melon (PI 482460) v1

Overview


Name	PI0021365
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr04: 17139812 .. 17140527 (-)
RNA-Seq Expression	PI0021365
Synteny	PI0021365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATAAAGCATTAGGCGTCAAGGTAGAAATGGAGCAGAAACACAAGTTCCATAAGAAGAGGAGGGAAAAGCTTCATGAGGCGCTAGAGGTTGTGTTAATCCTAGAAAAAAAGGGGAAGGTGAGGTTGGATCAAGACGATGAACTGGCGGAGGAGCTCGAGCATGAGATCAAGGCGATGAGCCCGATTGAAGAGAACTCCAGGCGGTCGTCCAAGAAAATTTTGAGAAAAAGTACCACTAACCTGAAGAAGAAGAAGAGTAAGGTTGGTCCTTCTAAACTTGTTGAAGGCCAATGAGGAGAGGCGACTACGAGAGGTGGGAAAGGGAGTGCAACGCCTAAGGCTAATGTCACCAAGGAGGCTAAGATCGAGAAGGGCTTCTTTTCCTTCAATGGGCCCTTCTTGAATTTTTAGGCATGTCTATCAAGGAATTTGGGTGGTTGAGGTTTTTCAAGGGGCCGACAAAAATGCGGTTAGATGCCGTGAAGAAGTTCTACAATGCAAATTACCATCCATCTGAGTTTTATACGCTAGTGGAAGGCAAACACATATACTTCGACGTTGAGGTCATTAATGAACTATACGAATTACCTACGAGAGAAGAGACACCAGGGCAAGAGCTACTTCAAAACACCCTTAAGAGACAGACAAAGGAAACGTTGAAGAAAATCACAGGGTGTGGGGTGAAATGGGGCATTACATCCACCGGGTAG

mRNA sequence

ATGAAGGATAAAGCATTAGGCGTCAAGGTAGAAATGGAGCAGAAACACAAGTTCCATAAGAAGAGGAGGGAAAAGCTTCATGAGGCGCTAGAGGTTGTGTTAATCCTAGAAAAAAAGGGGAAGGTGAGGTTGGATCAAGACGATGAACTGGCGGAGGAGCTCGAGCATGAGATCAAGGCGATGAGCCCGATTGAAGAGAACTCCAGGCGGTCGTCCAAGAAAATTTTGAGAAAAAGTACCACTAACCTGAAGAAGAAGAAGAGCATGTCTATCAAGGAATTTGGGTGGTTGAGGTTTTTCAAGGGGCCGACAAAAATGCGGTTAGATGCCGTGAAGAAGTTCTACAATGCAAATTACCATCCATCTGAGTTTTATACGCTAGTGGAAGGCAAACACATATACTTCGACGTTGAGGTCATTAATGAACTATACGAATTACCTACGAGAGAAGAGACACCAGGGCAAGAGCTACTTCAAAACACCCTTAAGAGACAGACAAAGGAAACGTTGAAGAAAATCACAGGGTGTGGGGTGAAATGGGGCATTACATCCACCGGGTAG

Coding sequence (CDS)

ATGAAGGATAAAGCATTAGGCGTCAAGGTAGAAATGGAGCAGAAACACAAGTTCCATAAGAAGAGGAGGGAAAAGCTTCATGAGGCGCTAGAGGTTGTGTTAATCCTAGAAAAAAAGGGGAAGGTGAGGTTGGATCAAGACGATGAACTGGCGGAGGAGCTCGAGCATGAGATCAAGGCGATGAGCCCGATTGAAGAGAACTCCAGGCGGTCGTCCAAGAAAATTTTGAGAAAAAGTACCACTAACCTGAAGAAGAAGAAGAGCATGTCTATCAAGGAATTTGGGTGGTTGAGGTTTTTCAAGGGGCCGACAAAAATGCGGTTAGATGCCGTGAAGAAGTTCTACAATGCAAATTACCATCCATCTGAGTTTTATACGCTAGTGGAAGGCAAACACATATACTTCGACGTTGAGGTCATTAATGAACTATACGAATTACCTACGAGAGAAGAGACACCAGGGCAAGAGCTACTTCAAAACACCCTTAAGAGACAGACAAAGGAAACGTTGAAGAAAATCACAGGGTGTGGGGTGAAATGGGGCATTACATCCACCGGGTAG

Protein sequence

MKDKALGVKVEMEQKHKFHKKRREKLHEALEVVLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKSTTNLKKKKSMSIKEFGWLRFFKGPTKMRLDAVKKFYNANYHPSEFYTLVEGKHIYFDVEVINELYELPTREETPGQELLQNTLKRQTKETLKKITGCGVKWGITSTG

Homology

[Close]

BLAST of PI0021365 vs. ExPASy TrEMBL
Match: A0A5A7SQ81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00070 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 62/167 (37.13%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 33  VLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKSTTNLKKKK----- 92
           +++  K+ K+R  +D ELAEEL+ E++AMS          ++  RK  +N+K+++     
Sbjct: 1   MMLSYKQTKIR-SEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSA 60

Query: 93  -------SMSIKE-FGWLRFFKGPTKMRLDAVKKFYNANYHPSEFYTLVEGKHIYFDVEV 152
                  + +I+E FGW +FFKG +K+RL+ V+KFY ++++ +E+Y +++ K  YF++E 
Sbjct: 61  LPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEA 120

Query: 153 INELYELPTREETPGQELLQNTLKRQTKETLKKITGCGVKWGITSTG 187
           IN+LY  P   ETP   L+  TLKRQ  E L+ I   G ++ IT TG
Sbjct: 121 INKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG 166

[Close]

BLAST of PI0021365 vs. ExPASy TrEMBL
Match: A0A5A7U4E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46449G00020 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 64/178 (35.96%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 25  KLHEALEVVLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKSTTNLK 84
           K     E V  L  K      +D ELAEEL+ E++AMS ++ + R S KK  +K+    +
Sbjct: 8   KFKRISEQVETLSCKQTTIRGEDVELAEELKLEVEAMS-LDNDKRASPKKTRKKAAIKHE 67

Query: 85  KKKSMSI-----------------KEFGWLRFFKGPTKMRLDAVKKFYNANYHPSEFYTL 144
           K+K   +                  +    +  KG +K+RL  ++KFY ++ + +E+Y +
Sbjct: 68  KRKRSQVDASTPEGSQQGGEGGKAPKLSIAKEVKGTSKIRLKVIRKFYTSDLNQAEYYVI 127

Query: 145 VEGKHIYFDVEVINELYELPTREETPGQELLQNTLKRQTKETLKKITGCGVKWGITST 186
           ++GK IYF+VE IN+LY+LP   +TP Q L+  TLKRQ +E LK I   GV+  IT T
Sbjct: 128 MDGKSIYFNVEAINKLYDLPFDAKTPEQALITTTLKRQAREALKTIVWLGVECDITLT 184

[Close]

BLAST of PI0021365 vs. ExPASy TrEMBL
Match: A0A5A7URT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00140 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 54  LEHEIKAMSPIEENSRRSSKKILRKSTTNLKKKKSMSIKEFGWLRFFKGPTKMRLDAVKK 113
           ++HE +  S +E ++   S    ++     K  K    KE       KG +K+RL  V+K
Sbjct: 20  IKHEKRKRSQVEASTLEGS----QQGVEGGKAPKLSIAKE------VKGTSKIRLKVVRK 79

Query: 114 FYNANYHPSEFYTLVEGKHIYFDVEVINELYELPTREETPGQELLQNTLKRQTKETLKKI 173
           FY ++ + +E+Y +++GK IYF+VE IN+LY+LP   ETP Q L+  TLKRQ +E LK I
Sbjct: 80  FYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAREALKTI 139

Query: 174 TGCGVKWGITSTG 187
              GV+  IT TG
Sbjct: 140 VWLGVECDITLTG 142

[Close]

BLAST of PI0021365 vs. ExPASy TrEMBL
Match: A0A5A7U0J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00950 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 21  KRREKLHEALEVVLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKST 80
           + RE+LHE L+V+ ILE KGK +    +EL E LE EIKA+S I EN      K LRKST
Sbjct: 110 EEREELHEKLDVMPILEAKGKAKQVSFNELVEVLEQEIKAISSI-ENDATPLPKNLRKST 169

Query: 81  TNLKKKKSM-----------------------SIKEFGWLRFFKGPTKMRLDAVKKFYNA 140
           T+  KK ++                       +I +    +  K   ++ +D V+KFY+ 
Sbjct: 170 TSKAKKVTIGTLRSDEVQTNQDNAIAKGEEVATIPKIKIDKIIKVEKEVCMDVVQKFYDV 229

Query: 141 NYHPSEFYTLVEGKHIYFDVEVINELYELP 148
           +YH S FYT+VEGK +YF+ E I +LY+ P
Sbjct: 230 DYHSSVFYTIVEGKRVYFEEEAIKKLYKFP 258

[Close]

BLAST of PI0021365 vs. ExPASy TrEMBL
Match: A0A5A7U8H4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00470 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 104 TKMRLDAVKKFYNANYHPSEFYTLVEGKHIYFDVEVINELYELPTREETPGQELLQNTLK 163
           TK+RLD VKKFY+A YHP++ Y  +E + IYF  E IN+LY+LP   E PG  ++    +
Sbjct: 38  TKVRLDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIITKPTR 97

Query: 164 RQTKETLKKIT 175
             TKE LK IT
Sbjct: 98  GITKEVLKTIT 108

[Close]

BLAST of PI0021365 vs. NCBI nr
Match: KAA0031701.1 (hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK04411.1 hypothetical protein E5676_scaffold409G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-18
Identity = 62/167 (37.13%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 33  VLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKSTTNLKKKK----- 92
           +++  K+ K+R  +D ELAEEL+ E++AMS          ++  RK  +N+K+++     
Sbjct: 1   MMLSYKQTKIR-SEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSA 60

Query: 93  -------SMSIKE-FGWLRFFKGPTKMRLDAVKKFYNANYHPSEFYTLVEGKHIYFDVEV 152
                  + +I+E FGW +FFKG +K+RL+ V+KFY ++++ +E+Y +++ K  YF++E 
Sbjct: 61  LPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEA 120

Query: 153 INELYELPTREETPGQELLQNTLKRQTKETLKKITGCGVKWGITSTG 187
           IN+LY  P   ETP   L+  TLKRQ  E L+ I   G ++ IT TG
Sbjct: 121 INKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG 166

[Close]

BLAST of PI0021365 vs. NCBI nr
Match: KAA0050753.1 (hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-15
Identity = 64/178 (35.96%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 25  KLHEALEVVLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKSTTNLK 84
           K     E V  L  K      +D ELAEEL+ E++AMS ++ + R S KK  +K+    +
Sbjct: 8   KFKRISEQVETLSCKQTTIRGEDVELAEELKLEVEAMS-LDNDKRASPKKTRKKAAIKHE 67

Query: 85  KKKSMSI-----------------KEFGWLRFFKGPTKMRLDAVKKFYNANYHPSEFYTL 144
           K+K   +                  +    +  KG +K+RL  ++KFY ++ + +E+Y +
Sbjct: 68  KRKRSQVDASTPEGSQQGGEGGKAPKLSIAKEVKGTSKIRLKVIRKFYTSDLNQAEYYVI 127

Query: 145 VEGKHIYFDVEVINELYELPTREETPGQELLQNTLKRQTKETLKKITGCGVKWGITST 186
           ++GK IYF+VE IN+LY+LP   +TP Q L+  TLKRQ +E LK I   GV+  IT T
Sbjct: 128 MDGKSIYFNVEAINKLYDLPFDAKTPEQALITTTLKRQAREALKTIVWLGVECDITLT 184

[Close]

BLAST of PI0021365 vs. NCBI nr
Match: KAA0057357.1 (hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK30046.1 hypothetical protein E5676_scaffold216G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 54  LEHEIKAMSPIEENSRRSSKKILRKSTTNLKKKKSMSIKEFGWLRFFKGPTKMRLDAVKK 113
           ++HE +  S +E ++   S    ++     K  K    KE       KG +K+RL  V+K
Sbjct: 20  IKHEKRKRSQVEASTLEGS----QQGVEGGKAPKLSIAKE------VKGTSKIRLKVVRK 79

Query: 114 FYNANYHPSEFYTLVEGKHIYFDVEVINELYELPTREETPGQELLQNTLKRQTKETLKKI 173
           FY ++ + +E+Y +++GK IYF+VE IN+LY+LP   ETP Q L+  TLKRQ +E LK I
Sbjct: 80  FYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAREALKTI 139

Query: 174 TGCGVKWGITSTG 187
              GV+  IT TG
Sbjct: 140 VWLGVECDITLTG 142

[Close]

BLAST of PI0021365 vs. NCBI nr
Match: KAA0047756.1 (hypothetical protein E6C27_scaffold1059G00170 [Cucumis melo var. makuwa] >TYK02390.1 hypothetical protein E5676_scaffold155G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-12
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 21  KRREKLHEALEVVLILEKKGKVRLDQDDELAEELEHEIKAMSPIEENSRRSSKKILRKST 80
           + RE+LHE L+V+ ILE KGK +    +EL E LE EIKA+S I EN      K LRKST
Sbjct: 110 EEREELHEKLDVMPILEAKGKAKQVSFNELVEVLEQEIKAISSI-ENDATPLPKNLRKST 169

Query: 81  TNLKKKKSM-----------------------SIKEFGWLRFFKGPTKMRLDAVKKFYNA 140
           T+  KK ++                       +I +    +  K   ++ +D V+KFY+ 
Sbjct: 170 TSKAKKVTIGTLRSDEVQTNQDNAIAKGEEVATIPKIKIDKIIKVEKEVCMDVVQKFYDV 229

Query: 141 NYHPSEFYTLVEGKHIYFDVEVINELYELP 148
           +YH S FYT+VEGK +YF+ E I +LY+ P
Sbjct: 230 DYHSSVFYTIVEGKRVYFEEEAIKKLYKFP 258

[Close]

BLAST of PI0021365 vs. NCBI nr
Match: KAA0049901.1 (hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644.1 hypothetical protein E5676_scaffold105G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-10
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 104 TKMRLDAVKKFYNANYHPSEFYTLVEGKHIYFDVEVINELYELPTREETPGQELLQNTLK 163
           TK+RLD VKKFY+A YHP++ Y  +E + IYF  E IN+LY+LP   E PG  ++    +
Sbjct: 38  TKVRLDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIITKPTR 97

Query: 164 RQTKETLKKIT 175
             TKE LK IT
Sbjct: 98  GITKEVLKTIT 108

The following BLAST results are available for this feature:

BLAST of PI0021365 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ81	4.5e-18	37.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4E3	1.6e-15	35.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7URT6	3.3e-13	39.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0J6	1.3e-12	39.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8H4	1.6e-10	50.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0021365 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031701.1	9.3e-18	37.13	hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0050753.1	3.3e-15	35.96	hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa]	[more]
KAA0057357.1	6.9e-13	39.85	hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK300...	[more]
KAA0047756.1	2.6e-12	39.33	hypothetical protein E6C27_scaffold1059G00170 [Cucumis melo var. makuwa] >TYK023...	[more]
KAA0049901.1	3.2e-10	50.70	hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644...	[more]

BLAST of PI0021365 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021365.1	PI0021365.1	mRNA