PI0021361 (gene) Melon (PI 482460) v1

Overview


Name	PI0021361
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 18799143 .. 18799895 (+)
RNA-Seq Expression	PI0021361
Synteny	PI0021361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGAAGATGTTTTGTCATTCTATACCACCTACTTAGGACGACTTCTGGATTACCGTCGACGGAATTCATCGACGTTGAGGAGATGGTCACCATGTTCCTCCTTGTACTCGCGCACGATGTGAAGAACCGAGTGATCCAAAAGGAGTTCGTGCAGTCGGGTGAGACAATTTCACAACATTTCAACATAGTCTTGTTGACAGTGCTACGCCTGCACGACGAGTTGTTGAAGAAACCTCAACCAGTAACGAACGCATGCACAGATCCCAAATGGAAGTGGTTTCAGATAGGGTACTTTATCAATGGTCGTTAGTTGGACATGTTTACCTTTACGGTTTGCATATTTACGATCTTCCTACAGAATTGCCTAGGTGCGTTAGATGGCACATATATAAAGGTAAACGTGAGCGCAACTGATCGTCCGAGATATAGGACACGGAAGGGCGAAGTTGCCACGAGCATCCTAGGTGTATGTGATACGAAAGGGGATTTTGTGTTCGTTTTAGTTGGCTGGGAAGGGTCTGCAGCCGATTCTCGCATCCTTAGAGTTGCTATTTCAAGACCTAATGGACTAAGGGTTCCGAAGGGTACCTACATACCCATCCTTCTTCTCAACTATATTTTAAATGTTCAACAACAAGCATTTGAAACATTCAATATCCCAATAGGGTACTACTACTTATGCGATGCCAAGTATCCCAACGCTGAAGGTTTCCTGGCTCCATACAGAAGACAACGATACAACCTGTAG

mRNA sequence

ATGGACAGAAGATGTTTTGTCATTCTATACCACCTACTTAGGACGACTTCTGGATTACCGTCGACGGAATTCATCGACGTTGAGGAGATGGTCACCATGTTCCTCCTTGTACTCGCGCACGATGTGAAGAACCGAGTGATCCAAAAGGAGTTCGTGCAGTCGGGTGAGACAATTTCACAACATTTCAACATAGTCTTGTTGACAGTGCTACGCCTGCACGACGAGTTGTTGAAGAAACCTCAACCAAATTGCCTAGGTGCGTTAGATGGCACATATATAAAGGTAAACGTGAGCGCAACTGATCGTCCGAGATATAGGACACGGAAGGGCGAAGTTGCCACGAGCATCCTAGGTGTATGTGATACGAAAGGGGATTTTGTGTTCGTTTTAGTTGGCTGGGAAGGGTCTGCAGCCGATTCTCGCATCCTTAGAGTTGCTATTTCAAGACCTAATGGACTAAGGGTTCCGAAGGGTACCTACATACCCATCCTTCTTCTCAACTATATTTTAAATGTTCAACAACAAGCATTTGAAACATTCAATATCCCAATAGGGTACTACTACTTATGCGATGCCAAGTATCCCAACGCTGAAGGTTTCCTGGCTCCATACAGAAGACAACGATACAACCTGTAG

Coding sequence (CDS)

ATGGACAGAAGATGTTTTGTCATTCTATACCACCTACTTAGGACGACTTCTGGATTACCGTCGACGGAATTCATCGACGTTGAGGAGATGGTCACCATGTTCCTCCTTGTACTCGCGCACGATGTGAAGAACCGAGTGATCCAAAAGGAGTTCGTGCAGTCGGGTGAGACAATTTCACAACATTTCAACATAGTCTTGTTGACAGTGCTACGCCTGCACGACGAGTTGTTGAAGAAACCTCAACCAAATTGCCTAGGTGCGTTAGATGGCACATATATAAAGGTAAACGTGAGCGCAACTGATCGTCCGAGATATAGGACACGGAAGGGCGAAGTTGCCACGAGCATCCTAGGTGTATGTGATACGAAAGGGGATTTTGTGTTCGTTTTAGTTGGCTGGGAAGGGTCTGCAGCCGATTCTCGCATCCTTAGAGTTGCTATTTCAAGACCTAATGGACTAAGGGTTCCGAAGGGTACCTACATACCCATCCTTCTTCTCAACTATATTTTAAATGTTCAACAACAAGCATTTGAAACATTCAATATCCCAATAGGGTACTACTACTTATGCGATGCCAAGTATCCCAACGCTGAAGGTTTCCTGGCTCCATACAGAAGACAACGATACAACCTGTAG

Protein sequence

MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQHFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL

Homology

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BLAST of PI0021361 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.4e-78
Identity = 156/225 (69.33%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRRCF IL HLLRTT+GL  TE IDVEEMV MFL +LAHDVKNR+IQ+EFV+SGET+S+
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  HFNIVLLTVLRLHDELLKKPQP--------------NCLGALDGTYIKVNVSATDRPRYR 120
           HFNIVLL   RLHDELLKKPQP              NCLGALDGTYIKVNVSATDRPRYR
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 TRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLL 180
           TRKGEVAT++LG CDTKGDFVFVL GWEGSAADSRILR AISR NGL+VPK         
Sbjct: 121 TRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPK--------- 180

Query: 181 NYILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
                             GYYYLCDA YPNAEGFLAPYR +RY+L
Sbjct: 181 ------------------GYYYLCDAGYPNAEGFLAPYRGERYHL 198

[Close]

BLAST of PI0021361 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.4e-76
Identity = 152/225 (67.56%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRRCF IL HLLRT +GL STE +DVEEMV MFL +LAHDVKNRVIQ+EF++SGETIS+
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNIVLLTVLRLHDELLKKPQP--------------NCLGALDGTYIKVNVSATDRPRYR 120
           HFN+VLL V+RLHDELLKKPQP              NCLGALDGTYIKVNV A+DR RYR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLL 180
           TRKGEVAT++LGVCDTKGDFV+VL GWEGSAADSRILR A+SRPN L+VPK         
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPK--------- 246

Query: 181 NYILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
                             GYYYL DA YPNAEGFLAPYR QRY+L
Sbjct: 247 ------------------GYYYLVDAGYPNAEGFLAPYRGQRYHL 264

[Close]

BLAST of PI0021361 vs. ExPASy TrEMBL
Match: A0A5A7V4C6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005200 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.4e-76
Identity = 147/211 (69.67%), Postives = 165/211 (78.20%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKV+V A DRP +RTRKGE+AT +LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFRTRKGEIATDVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADSRILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA+YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAEYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.0e-76
Identity = 147/211 (69.67%), Postives = 165/211 (78.20%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKVNV A DRP +RTRKGE+AT++LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADS+ILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAGYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.0e-76
Identity = 147/211 (69.67%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKVNV   DRP +RTRKGE+AT++LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADSRILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAGYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 9.1e-78
Identity = 156/225 (69.33%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRRCF IL HLLRTT+GL  TE IDVEEMV MFL +LAHDVKNR+IQ+EFV+SGET+S+
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  HFNIVLLTVLRLHDELLKKPQP--------------NCLGALDGTYIKVNVSATDRPRYR 120
           HFNIVLL   RLHDELLKKPQP              NCLGALDGTYIKVNVSATDRPRYR
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 TRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLL 180
           TRKGEVAT++LG CDTKGDFVFVL GWEGSAADSRILR AISR NGL+VPK         
Sbjct: 121 TRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPK--------- 180

Query: 181 NYILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
                             GYYYLCDA YPNAEGFLAPYR +RY+L
Sbjct: 181 ------------------GYYYLCDAGYPNAEGFLAPYRGERYHL 198

[Close]

BLAST of PI0021361 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 152/225 (67.56%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRRCF IL HLLRT +GL STE +DVEEMV MFL +LAHDVKNRVIQ+EF++SGETIS+
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNIVLLTVLRLHDELLKKPQP--------------NCLGALDGTYIKVNVSATDRPRYR 120
           HFN+VLL V+RLHDELLKKPQP              NCLGALDGTYIKVNV A+DR RYR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLL 180
           TRKGEVAT++LGVCDTKGDFV+VL GWEGSAADSRILR A+SRPN L+VPK         
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPK--------- 246

Query: 181 NYILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
                             GYYYL DA YPNAEGFLAPYR QRY+L
Sbjct: 247 ------------------GYYYLVDAGYPNAEGFLAPYRGQRYHL 264

[Close]

BLAST of PI0021361 vs. NCBI nr
Match: KAA0062150.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 147/211 (69.67%), Postives = 165/211 (78.20%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKV+V A DRP +RTRKGE+AT +LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFRTRKGEIATDVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADSRILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA+YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAEYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 147/211 (69.67%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKVNV   DRP +RTRKGE+AT++LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADSRILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAGYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 147/211 (69.67%), Postives = 165/211 (78.20%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MDRR F IL HLLR  +GL STE +DVEEMV MFL VLAHDVKNRVIQ+EFV+SGET+S+
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
           HFNIVLL VLRL++EL+K+P PNCLGALDGTYIKVNV A DRP +RTRKGE+AT++LGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           DTKGDFV+VL GWEGSAADS+ILR AISR NGL+VPK                       
Sbjct: 160 DTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPK----------------------- 219

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQRYNL 212
               GYYYLCDA YPNAEGFLAPYR QRY+L
Sbjct: 220 ----GYYYLCDAGYPNAEGFLAPYRGQRYHL 223

[Close]

BLAST of PI0021361 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-27
Identity = 70/216 (32.41%), Postives = 108/216 (50.00%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           MD+  F  L  LL+T   L  T  I +E  + +FL ++ H+++ R +Q+ F  SGETIS+
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNIVLLTVLRL---------HDELLKKPQP---NCLGALDGTYIKVNVSATDRPRYRTR 120
           HFN VL  V+ +         + + L+   P   +C+G +D  +I V V   ++  +R  
Sbjct: 108 HFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNG 167

Query: 121 KGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNY 180
            G +  ++L        F +VL GWEGSA+D ++L  A++R N L+VP+G          
Sbjct: 168 NGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGK--------- 227

Query: 181 ILNVQQQAFETFNIPIGYYYLCDAKYPNAEGFLAPY 205
                             YY+ D KYPN  GF+APY
Sbjct: 228 ------------------YYIVDNKYPNLPGFIAPY 236

[Close]

BLAST of PI0021361 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17
Identity = 65/230 (28.26%), Postives = 97/230 (42.17%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           M   CF  L ++L+T   L  T  I +EE V MFL +  H+   R +   F ++ ET+ +
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNIVLLTVLRL---------HDELLKKPQ------------PNCLGALDGTYIKVNVSA 120
            F  VL     L           EL + P+               +GA+DGT++ V V  
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKP 191

Query: 121 TDRPRYRTRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGT 180
             +  Y  R    + +I+ +CD K  F ++  G  GS  D+ +L++A             
Sbjct: 192 DLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA------------- 251

Query: 181 YIPILLLNYILNVQQQAFETFNIPIG-YYYLCDAKYPNAEGFLAPYRRQR 209
                         QQ+   F +P    YYL D+ YPN +G LAPYR  R
Sbjct: 252 --------------QQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSR 274

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BLAST of PI0021361 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-14
Identity = 59/207 (28.50%), Postives = 87/207 (42.03%), Query Frame = 0


Query: 1   MDRRCFVILYHLLRTTSGLPSTEFIDVEEMVTMFLLVLAHDVKNRVIQKEFVQSGETISQ 60
           M    F  L  +L    GL S+  I ++E V +FL++ A +   R I   F  + ETI +
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNIVLLTVLRLHDELLKKPQPNCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVC 120
            F+ VL  + RL  E ++  +   L A+     ++       P      G  + ++L +C
Sbjct: 90  KFHDVLKAMERLAVEYIRPRKVEELRAISN---RLQDDTRYWPFLMDLLGIASFNVLAIC 149

Query: 121 DTKGDFVFVLVGWEGSAADSRILRVAISRPNGLRVPKGTYIPILLLNYILNVQQQAFETF 180
           D    F +  VG  GS  D+R+L  AIS      VP                        
Sbjct: 150 DLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP------------------------ 207

Query: 181 NIPIGYYYLCDAKYPNAEGFLAPYRRQ 208
             P   YYL D+ Y N  G+LAPYRR+
Sbjct: 210 --PDSKYYLVDSGYANKRGYLAPYRRE 207

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BLAST of PI0021361 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-13
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 83  NCLGALDGTYIKVNVSATDRPRYRTRKGEVATSILGVCDTKGDFVFVLVGWEGSAADSRI 142
           +C+GA+D T+I   VS    P +R RKG+++ ++L  C+   +F++VL GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 143 LRVAISR-PNGLRVPK 158
           L  A++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

The following BLAST results are available for this feature:

BLAST of PI0021361 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1U8	4.4e-78	69.33	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1	[more]
A0A5A7TXW1	5.4e-76	67.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4C6	5.4e-76	69.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6J9	7.0e-76	69.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	7.0e-76	69.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0021361 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455792.1	9.1e-78	69.33	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
KAA0046727.1	1.1e-75	67.56	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0062150.1	1.1e-75	69.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	1.4e-75	69.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062587.1	1.4e-75	69.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0021361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.6e-27	32.41	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.5e-17	28.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	3.4e-14	28.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	4.9e-13	43.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 88..204 e-value: 9.1E-7 score: 28.7
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..205
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021361.1	PI0021361.1	mRNA