PI0021252 (gene) Melon (PI 482460) v1

Overview


Name	PI0021252
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr06: 26140607 .. 26140939 (+)
RNA-Seq Expression	PI0021252
Synteny	PI0021252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGACCGTATTTCCAAGCTACACCAAGAACTAAAGAATCACCTAGAGCTTGCTAATAATTCATACAAAACGACCGCCAACTCTCACAAGCGTTTTAAGGAGTATCAAGTGGGTGATCTTGTTATGGTATACCTCCGAAAATCACGTTTTCCTGCCAGTCATCATTCTAAAATGACCAACAAGCGCATTGGTCTGTTTCAAATTTTGGAGAGACTTGGCCCCAATGCCTACCGATTAGATCTTCCGGCTACCATGAGAATCAGCCCATCATTCAACGTTTCTGATCTTTCTCCTTACCATGCTCCAGATTCTTTTTCTTTGGCCCCCTAA

mRNA sequence

ATGACTGACCGTATTTCCAAGCTACACCAAGAACTAAAGAATCACCTAGAGCTTGCTAATAATTCATACAAAACGACCGCCAACTCTCACAAGCGTTTTAAGGAGTATCAAGTGGGTGATCTTGTTATGGTATACCTCCGAAAATCACGTTTTCCTGCCAGTCATCATTCTAAAATGACCAACAAGCGCATTGGTCTGTTTCAAATTTTGGAGAGACTTGGCCCCAATGCCTACCGATTAGATCTTCCGGCTACCATGAGAATCAGCCCATCATTCAACGTTTCTGATCTTTCTCCTTACCATGCTCCAGATTCTTTTTCTTTGGCCCCCTAA

Coding sequence (CDS)

ATGACTGACCGTATTTCCAAGCTACACCAAGAACTAAAGAATCACCTAGAGCTTGCTAATAATTCATACAAAACGACCGCCAACTCTCACAAGCGTTTTAAGGAGTATCAAGTGGGTGATCTTGTTATGGTATACCTCCGAAAATCACGTTTTCCTGCCAGTCATCATTCTAAAATGACCAACAAGCGCATTGGTCTGTTTCAAATTTTGGAGAGACTTGGCCCCAATGCCTACCGATTAGATCTTCCGGCTACCATGAGAATCAGCCCATCATTCAACGTTTCTGATCTTTCTCCTTACCATGCTCCAGATTCTTTTTCTTTGGCCCCCTAA

Protein sequence

MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIGLFQILERLGPNAYRLDLPATMRISPSFNVSDLSPYHAPDSFSLAP

Homology

[Close]

BLAST of PI0021252 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 7    KLHQELKNHLELANNSYKTTANSH-KRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIG 66
            ++ Q +K HL   N   K   +   +  +E+Q GDLVMV   K+ F     +K+     G
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAG 1221

Query: 67   LFQILERLGPNAYRLDLPATMR--ISPSFNVSDLSPY 101
             F +L++ GPN Y LDLP +++   S +F+VS L  Y
Sbjct: 1222 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of PI0021252 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 7    KLHQELKNHLELANNSYKTTANSH-KRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIG 66
            ++ Q +K HL   N   K   +   +  +E+Q GDLVMV   K+ F     +K+     G
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAG 1221

Query: 67   LFQILERLGPNAYRLDLPATMR--ISPSFNVSDLSPY 101
             F +L++ GPN Y LDLP +++   S +F+VS L  Y
Sbjct: 1222 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of PI0021252 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 7    KLHQELKNHLELANNSYKTTANSH-KRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIG 66
            ++ Q +K HL   N   K   +   +  +E+Q GDLVMV   K+ F     +K+     G
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAG 1221

Query: 67   LFQILERLGPNAYRLDLPATMR--ISPSFNVSDLSPY 101
             F +L++ GPN Y LDLP +++   S +F+VS L  Y
Sbjct: 1222 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of PI0021252 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 7    KLHQELKNHLELANNSYKTTANSH-KRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIG 66
            ++ Q +K HL   N   K   +   +  +E+Q GDLVMV   K+ F     +K+     G
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAG 1221

Query: 67   LFQILERLGPNAYRLDLPATMR--ISPSFNVSDLSPY 101
             F +L++ GPN Y LDLP +++   S +F+VS L  Y
Sbjct: 1222 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of PI0021252 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 7    KLHQELKNHLELANNSYKTTANSH-KRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIG 66
            ++ Q +K HL   N   K   +   +  +E+Q GDLVMV   K+ F     +K+     G
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAG 1221

Query: 67   LFQILERLGPNAYRLDLPATMR--ISPSFNVSDLSPY 101
             F +L++ GPN Y LDLP +++   S +F+VS L  Y
Sbjct: 1222 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of PI0021252 vs. ExPASy TrEMBL
Match: A0A5D3E798 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008290 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
           M D I KLHQE+KNHLELAN+SYK   N+HKR KEYQVGDLVMVYL KSRFP SHHSKMT
Sbjct: 41  MVDHIFKLHQEVKNHLELANDSYKAATNTHKRLKEYQVGDLVMVYLYKSRFP-SHHSKMT 100

Query: 61  NKRIGLFQILERLGPNAYRLDLPATMRISPSFNVSDLSPYHAPDSFSLAP 111
           NK I  FQILERL PNAYRLDL A + I+PSFN+SDLSPYHA DSFSLAP
Sbjct: 101 NKHIDPFQILERLDPNAYRLDLQANIIINPSFNISDLSPYHALDSFSLAP 149

[Close]

BLAST of PI0021252 vs. ExPASy TrEMBL
Match: A0A5A7SQX1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00300 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.2e-38
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
           M DR SKLHQE+K+HL+LAN+SYKT ANSHKR +  +   L+  YL KS FPA HHSKMT
Sbjct: 325 MADRNSKLHQEVKDHLQLANDSYKTAANSHKRSRSIKWVTLLW-YLGKSCFPAGHHSKMT 384

Query: 61  NKRIGLFQILERLGPNAYRLDLPATMRISPSFNVSDLSPYHAPDSFSLA 110
           NKRIG FQ+LERLGPN+YRLDLPATMRI+PSFNVSDLSPYHAPDSFSLA
Sbjct: 385 NKRIGPFQVLERLGPNSYRLDLPATMRINPSFNVSDLSPYHAPDSFSLA 432

[Close]

BLAST of PI0021252 vs. ExPASy TrEMBL
Match: A0A5D3C8T7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00750 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 77/90 (85.56%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
          M DRISKL+Q++KNHLELAN+SYKT ANSHK  KEYQVGDLVM YL KSRFPA HHSKMT
Sbjct: 6  MADRISKLNQKVKNHLELANDSYKTAANSHKCLKEYQVGDLVMAYLHKSRFPAGHHSKMT 65

Query: 61 NKRIGLFQILERLGPNAYRLDLPATMRISP 91
          NKRIG FQILER GPNAYRLDLPATMRISP
Sbjct: 66 NKRIGPFQILERPGPNAYRLDLPATMRISP 95

[Close]

BLAST of PI0021252 vs. ExPASy TrEMBL
Match: A0A5D3C319 (Tyrosine aminotransferase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00580 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.8e-29
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
          M D ISKLHQE+KNHLEL N++YK  AN HKR KEYQ GDLV+VYL KS F   HHSKM 
Sbjct: 6  MADHISKLHQEVKNHLELTNDTYKAAANFHKRLKEYQAGDLVVVYLCKSHFHVGHHSKMI 65

Query: 61 NKRIGLFQILERLGPNAYRLDLPATMRISPSFNV 95
          NK IG FQI ERL PNAY+LDL   MRI PSFNV
Sbjct: 66 NKCIGPFQIFERLDPNAYQLDLQDNMRIRPSFNV 99

[Close]

BLAST of PI0021252 vs. ExPASy TrEMBL
Match: A0A5D3DJI9 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00520 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 10  QELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIGLFQI 69
           QE+K++LE  ++SYKT ANSHK FKEYQVGDLVMVYL KSR+P           IGLFQI
Sbjct: 195 QEVKDYLEFISDSYKTVANSHKHFKEYQVGDLVMVYLLKSRYPTG-----GGGTIGLFQI 254

Query: 70  LERLGPNAYRLDLPATMRISPSFNVSDLSPYHA 103
           LERLGPNAYRLDLPATMRI+ SFNVSDLSPYHA
Sbjct: 255 LERLGPNAYRLDLPATMRINLSFNVSDLSPYHA 282

[Close]

BLAST of PI0021252 vs. NCBI nr
Match: KAA0063264.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK31510.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-39
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
           M D I KLHQE+KNHLELAN+SYK   N+HKR KEYQVGDLVMVYL KSRFP SHHSKMT
Sbjct: 41  MVDHIFKLHQEVKNHLELANDSYKAATNTHKRLKEYQVGDLVMVYLYKSRFP-SHHSKMT 100

Query: 61  NKRIGLFQILERLGPNAYRLDLPATMRISPSFNVSDLSPYHAPDSFSLAP 111
           NK I  FQILERL PNAYRLDL A + I+PSFN+SDLSPYHA DSFSLAP
Sbjct: 101 NKHIDPFQILERLDPNAYRLDLQANIIINPSFNISDLSPYHALDSFSLAP 149

[Close]

BLAST of PI0021252 vs. NCBI nr
Match: KAA0031951.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16774.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
           M DR SKLHQE+K+HL+LAN+SYKT ANSHKR +  +   L+  YL KS FPA HHSKMT
Sbjct: 325 MADRNSKLHQEVKDHLQLANDSYKTAANSHKRSRSIKWVTLLW-YLGKSCFPAGHHSKMT 384

Query: 61  NKRIGLFQILERLGPNAYRLDLPATMRISPSFNVSDLSPYHAPDSFSLA 110
           NKRIG FQ+LERLGPN+YRLDLPATMRI+PSFNVSDLSPYHAPDSFSLA
Sbjct: 385 NKRIGPFQVLERLGPNSYRLDLPATMRINPSFNVSDLSPYHAPDSFSLA 432

[Close]

BLAST of PI0021252 vs. NCBI nr
Match: KAA0047635.1 (hypothetical protein E6C27_scaffold115G001170 [Cucumis melo var. makuwa] >TYK08293.1 hypothetical protein E5676_scaffold648G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 77/90 (85.56%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
          M DRISKL+Q++KNHLELAN+SYKT ANSHK  KEYQVGDLVM YL KSRFPA HHSKMT
Sbjct: 6  MADRISKLNQKVKNHLELANDSYKTAANSHKCLKEYQVGDLVMAYLHKSRFPAGHHSKMT 65

Query: 61 NKRIGLFQILERLGPNAYRLDLPATMRISP 91
          NKRIG FQILER GPNAYRLDLPATMRISP
Sbjct: 66 NKRIGPFQILERPGPNAYRLDLPATMRISP 95

[Close]

BLAST of PI0021252 vs. NCBI nr
Match: KAA0040559.1 (tyrosine aminotransferase-like [Cucumis melo var. makuwa] >TYK05602.1 tyrosine aminotransferase-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MTDRISKLHQELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMT 60
          M D ISKLHQE+KNHLEL N++YK  AN HKR KEYQ GDLV+VYL KS F   HHSKM 
Sbjct: 6  MADHISKLHQEVKNHLELTNDTYKAAANFHKRLKEYQAGDLVVVYLCKSHFHVGHHSKMI 65

Query: 61 NKRIGLFQILERLGPNAYRLDLPATMRISPSFNV 95
          NK IG FQI ERL PNAY+LDL   MRI PSFNV
Sbjct: 66 NKCIGPFQIFERLDPNAYQLDLQDNMRIRPSFNV 99

[Close]

BLAST of PI0021252 vs. NCBI nr
Match: TYK23737.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-28
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 10  QELKNHLELANNSYKTTANSHKRFKEYQVGDLVMVYLRKSRFPASHHSKMTNKRIGLFQI 69
           QE+K++LE  ++SYKT ANSHK FKEYQVGDLVMVYL KSR+P           IGLFQI
Sbjct: 195 QEVKDYLEFISDSYKTVANSHKHFKEYQVGDLVMVYLLKSRYPTG-----GGGTIGLFQI 254

Query: 70  LERLGPNAYRLDLPATMRISPSFNVSDLSPYHA 103
           LERLGPNAYRLDLPATMRI+ SFNVSDLSPYHA
Sbjct: 255 LERLGPNAYRLDLPATMRINLSFNVSDLSPYHA 282

The following BLAST results are available for this feature:

BLAST of PI0021252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.5e-05	35.05	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.5e-05	35.05	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.5e-05	35.05	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.5e-05	35.05	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.5e-05	35.05	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of PI0021252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E798	1.6e-39	79.09	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SQX1	5.2e-38	77.06	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C8T7	5.3e-35	85.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C319	9.8e-29	71.28	Tyrosine aminotransferase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3DJI9	2.2e-28	74.19	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0021252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063264.1	3.3e-39	79.09	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK31510.1 Tran...	[more]
KAA0031951.1	1.1e-37	77.06	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16774.1 Tran...	[more]
KAA0047635.1	1.1e-34	85.56	hypothetical protein E6C27_scaffold115G001170 [Cucumis melo var. makuwa] >TYK082...	[more]
KAA0040559.1	2.0e-28	71.28	tyrosine aminotransferase-like [Cucumis melo var. makuwa] >TYK05602.1 tyrosine a...	[more]
TYK23737.1	4.5e-28	74.19	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0021252 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..104
None	No IPR available	PANTHER	PTHR24559:SF367	SUBFAMILY NOT NAMED	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021252.1	PI0021252.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding