PI0021241 (gene) Melon (PI 482460) v1

Overview
NamePI0021241
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr10: 12631219 .. 12631728 (+)
RNA-Seq ExpressionPI0021241
SyntenyPI0021241
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATAGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAGTCAGATGCAGAACCAGTGTGCGTTGAAGAAGAAATGGTAGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTCCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCAATGTAAGAAGTCGGATGAAGGTTGCAGATGA

mRNA sequence

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATAGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAGTCAGATGCAGAACCAGTGTGCGTTGAAGAAGAAATGGTAGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTCCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCAATGTAAGAAGTCGGATGAAGGTTGCAGATGA

Coding sequence (CDS)

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATAGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAGTCAGATGCAGAACCAGTGTGCGTTGAAGAAGAAATGGTAGCTAATAACGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCAAAGAGATGGAATTTGATGAGCGTGAACATGAATTTCCCTCAAATACATTCACTGACCTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTGGAGTCAACGCCGACAAAGTGGGTCATTCAATGTAAGAAGTCGGATGAAGGTTGCAGATGA

Protein sequence

MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVANNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTELYKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR
Homology
[Close]
BLAST of PI0021241 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.8e-73
Identity = 137/169 (81.07%), Postives = 155/169 (91.72%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD+++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 137/169 (81.07%), Postives = 154/169 (91.12%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 135/169 (79.88%), Postives = 152/169 (89.94%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIAL FPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA  VC EEEMVA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSI LPF N+VHLYVTVS VD  I+LNVE R VEEYVDV+PES+A PVC EEEMVA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSN FTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VDL I+LNVE + VEEYVDVD ESDA PVC EEEMVA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++E DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVIQCKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

[Close]
BLAST of PI0021241 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 137/169 (81.07%), Postives = 155/169 (91.72%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD+++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72
Identity = 137/169 (81.07%), Postives = 154/169 (91.12%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEEMVA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.6e-70
Identity = 135/169 (79.88%), Postives = 152/169 (89.94%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIAL FPN+VHLYVTVS VD  I+LNVE R VEEYVDV+PESDA  VC EEEMVA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 9.5e-70
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSI LPF N+VHLYVTVS VD  I+LNVE R VEEYVDV+PES+A PVC EEEMVA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSN FTDLDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVESTPTKWVI+CKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]
BLAST of PI0021241 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 5.2e-68
Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 0 

Query: 1   MNTMFSIALPFPNIVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAEPVCVEEEMVA 60
           MNTMFSIALPFPN+VHLYVTVS VDL I+LNVE + VEEYVDVD ESDA PVC EEEMVA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFKEMEFDEREHEFPSNTFTDLDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEF+EM+FD  E+E PSNTFTDLDMNAVD ++E DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTPTKWVIQCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVIQCKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

The following BLAST results are available for this feature:
BLAST of PI0021241 vs.
Match NameE-valueIdentityDescription
BLAST of PI0021241 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SS315.8e-7381.07DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BAB02.2e-7281.07Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T1X82.7e-7079.88SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3DIM24.6e-7078.70Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3DHR22.5e-6880.72GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of PI0021241 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034014.11.2e-7281.07uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
TYJ95836.14.6e-7281.07serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0036768.15.6e-7079.88uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa][more]
KAA0040476.19.5e-7078.70serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK23115.15.2e-6880.72GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of PI0021241 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021241.1PI0021241.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0008270 zinc ion binding