PI0021210 (gene) Melon (PI 482460) v1

Overview


Name	PI0021210
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr09: 7940073 .. 7940237 (+)
RNA-Seq Expression	PI0021210
Synteny	PI0021210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACACTGACATACCGGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCGGTGAAGAAATTCACTACATAGAGACATCGAGTGCATGGAGTCAATGGAAGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTACGTAATCAGTAA

mRNA sequence

ATGACGAACACTGACATACCGGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCGGTGAAGAAATTCACTACATAGAGACATCGAGTGCATGGAGTCAATGGAAGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTACGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACACTGACATACCGGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCGGTGAAGAAATTCACTACATAGAGACATCGAGTGCATGGAGTCAATGGAAGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTACGTAATCAGTAA

Protein sequence

MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ

Homology

[Close]

BLAST of PI0021210 vs. ExPASy TrEMBL
Match: A0A5A7UFY9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001210 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI DD+DE DST+ATT G++I+YIET++ W+QWKDELAE MFSDWEL NQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

[Close]

BLAST of PI0021210 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0021210 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0021210 vs. ExPASy TrEMBL
Match: A0A5A7UIM7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00420 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0021210 vs. ExPASy TrEMBL
Match: A0A5A7VLF4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001080 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI DD+DE DST+ATT  ++IHYIETS+ WS+W+D+LAE MFSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

[Close]

BLAST of PI0021210 vs. NCBI nr
Match: KAA0053146.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI DD+DE DST+ATT G++I+YIET++ W+QWKDELAE MFSDWEL NQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

[Close]

BLAST of PI0021210 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0021210 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0021210 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI D++DE DST+ATT  ++IHYIETS+ WSQW+D+LAE MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0021210 vs. NCBI nr
Match: KAA0067286.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNTDIPDDVDEGDSTYATTGGEEIHYIETSSAWSQWKDELAERMFSDWELRNQ 55
           MTN DI DD+DE DST+ATT  ++IHYIETS+ WS+W+D+LAE MFSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

The following BLAST results are available for this feature:

BLAST of PI0021210 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFY9	3.3e-14	72.22	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BL48	5.7e-14	72.22	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	5.7e-14	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UIM7	7.4e-14	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7VLF4	1.3e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of PI0021210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053146.1	6.9e-14	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nucleas...	[more]
KAA0067470.1	1.2e-13	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	1.2e-13	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0054126.1	1.5e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0067286.1	2.6e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0021210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021210.1	PI0021210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding