PI0021179 (gene) Melon (PI 482460) v1

Overview
NamePI0021179
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr05: 16833066 .. 16833230 (+)
RNA-Seq ExpressionPI0021179
SyntenyPI0021179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAACAATGATGTACCAGATGACGTTGATGAGGGTGACTCTACATATGCCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAATGCATGGAGTCAATGGAAGGACGAGCTTGCCGGAAAAATGTTCAATGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACAATGATGTACCAGATGACGTTGATGAGGGTGACTCTACATATGCCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAATGCATGGAGTCAATGGAAGGACGAGCTTGCCGGAAAAATGTTCAATGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGATGTACCAGATGACGTTGATGAGGGTGACTCTACATATGCCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAATGCATGGAGTCAATGGAAGGACGAGCTTGCCGGAAAAATGTTCAATGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ
Homology
BLAST of PI0021179 vs. ExPASy TrEMBL
Match: A0A5A7UFY9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001210 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ DD+DE DST+ATT G+DI+YIET+N W+QWKDELA +MF+DWEL NQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

BLAST of PI0021179 vs. ExPASy TrEMBL
Match: A0A5A7UIM7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00420 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

BLAST of PI0021179 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF+DWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

BLAST of PI0021179 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

BLAST of PI0021179 vs. ExPASy TrEMBL
Match: A0A5D3BCB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00180 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1  MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRN 54
          MTN D+PDD+DE  S++ATT G+DIHY+ETSN WS+W+DEL  +MF+DWELRN
Sbjct: 1  MTNFDIPDDIDEAYSSHATTVGDDIHYVETSNEWSRWRDELVDEMFSDWELRN 53

BLAST of PI0021179 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

BLAST of PI0021179 vs. NCBI nr
Match: KAA0053146.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ DD+DE DST+ATT G+DI+YIET+N W+QWKDELA +MF+DWEL NQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

BLAST of PI0021179 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

BLAST of PI0021179 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN D+ D++DE DST+ATT  +DIHYIETSN WSQW+D+LA +MF+DWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

BLAST of PI0021179 vs. NCBI nr
Match: XP_031740445.1 (uncharacterized protein LOC116403439 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNNDVPDDVDEGDSTYATTGGEDIHYIETSNAWSQWKDELAGKMFNDWELRNQ 55
           MTN    DDVDEGDSTYAT GG+DI ++E SN W+QW+D+LAG+MFN+W+LRN+
Sbjct: 274 MTNVSFVDDVDEGDSTYATIGGDDIQFVENSNEWTQWRDDLAGEMFNEWQLRNE 327

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UFY93.3e-1470.37Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7UIM73.3e-1470.37Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BL484.4e-1470.37Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VJX34.4e-1470.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCB27.4e-1467.92Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0054126.16.9e-1470.37putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0053146.16.9e-1470.37putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nucleas... [more]
KAA0067470.19.0e-1470.37retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99699.19.0e-1470.37putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
XP_031740445.11.2e-1366.67uncharacterized protein LOC116403439 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021179.1PI0021179.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding