PI0021142 (gene) Melon (PI 482460) v1

Overview


Name	PI0021142
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transcription termination factor MTERF5
Location	chr08: 19128388 .. 19130304 (-)
RNA-Seq Expression	PI0021142
Synteny	PI0021142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACAACGCCTGGGGTGAGTTTTGTGTACTTGGCCTGGAGATACCTTCTCGAATCGATCCATCTCTTTGGTCTTGATTTTTATTCTTATGTTCTTCATTTCCCACCAATGTAATAATTTCAGTACTTTCGTCTTAGTGTGTACAAAATTTCAAATTTTGGGGAAAATGTGAATTCTATATTTAAAGATATATAATCTCGTTTGGTACACAAGCATTTGGATGGTTAAACGAGATGAGGCACAACTATTATAGATTGGTCTAATGGGAAAAAAAGATCACGAAATGAGTTCAATCCATGGTAGCTATCAATTTGAAGAGTACTTCGTGTATGATCTATTATTTAAAAGTTGTTTCTAATACACTATTTTTTAGTAGAAGTGAAAGTATGAGGATTGAATCTTTATTTTCAGTAAGAATTCATTGGACCATTTTGTCTACTATTTTTTAGTAGAAGTGAAAGTATGAGGATTGAATCTTTATTTTCAGTAAGAATTCATTGGACCATTTTGTCTAGTAAGGTTTAATGGACTTTTTTCGACACAAGTGAGTATGCATGTTTAAATTTTTAATTGGTATAAATTAATGAAAAAAATTGTATGTTTAAGACATTATAGACATTTCTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTAATTTAGCGACTGAGAAAATGAGATGTCAAGAAAAGAAAAGATAATGACTTGAAAACATATTTAAATAGGAAATATGGTAATTTTGTGATCGATGGAGATGAGAGATTCCATAACTTTTACTTAATTAATTTTCATGAACAGCGTTTTTAAGTATAAATTAGGGATGGATTTGAATCCAAAACTTTGTCCATAGATACTAGTTATCTAGTTGAGGTAAAAAATATATATATATATATAGTAAAATTTTAGTTTTTATTAGTTTGCCAAGTATTTGCTTCCGGTTTTCCAATTTTTTTTAAAATAATGTTACTTAGATAGTTATTGTCAAAATAGGTGACGAACTTCAAACCATCATATATAATTACTTTATTTGTTTTCTAATTACTTAAAACAACTTACCATATAGAATTATATTTTTCCATATATAATAACAGAAATGATAGGATTTTTAATTTACTTATAACAAATTATTTTTGGAAACTTTTTCTTTTGCCAAACATAATTTTTGGATAATAATGATGTCAAATAATTAGAAAATGATTTCAATTTTTCTATTTTTTTTTTTTACTTGTTTTACTCATTTTTCGTTTTTTTAATTATTAAAATTTTCTTATACAAAAACCTACATGGTCTAAACCCTCCCTCCCATTTTCAGCCACTGCACACCGCCGCCGCTCTTGCCCGACACCGGCTCAGCAGCTGCCGCCGCACACTGCACTCTCAGCTGCCGTAGTTTTACTCTTCCGACGAGCTCGCTCTGCTCCTTTCTTCTCACGCTCTTTCGTCTCTTCGAGCAATCGGAGTTACTTATCTCTATATTTCTCTCTCAGAAACACAGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGTGCCGCCTCCGCTTATTGTTCAGATCCCCAAGGTTTTAGATTTTGTTTTGTTTTATTTTTTTTATTTTGTTTGTTGGTTGATTATCTTCACCCACAGAGAAGAAAATCAAGATAAAAAATTTATTCTCCCCCAGTCTAAATGATAACATAAAATTGAGAATGTATACATCACAGGCTAAGAAAGGGAAAAAAGGAAGCATATTAATCTTATATAAATCAATATAAAAAAAAAAAAAACTTGTTGGAACTGAAAATTTGCTCTCTGTGGGTGAAGAAATTTGTATTTGAAAAAATTGATACCGTTGTTAAGGGCAAATTAATTTGATGTTAATTGTTATGAGTTGAGGCTACTGATAAATATCTTGTTGTGATGTGGAACAGTGA

mRNA sequence

ATGGAAGACAACGCCTGGGGTGAGTTTTGTCCACTGCACACCGCCGCCGCTCTTGCCCGACACCGGCTCAGCAGCTGCCGCCGCACACTGCACTCTCAGCTGCCGTACAATCGGAGTTACTTATCTCTATATTTCTCTCTCAGAAACACAGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGTGCCGCCTCCGCTTATTGTTCAGATCCCCAAGTGA

Coding sequence (CDS)

ATGGAAGACAACGCCTGGGGTGAGTTTTGTCCACTGCACACCGCCGCCGCTCTTGCCCGACACCGGCTCAGCAGCTGCCGCCGCACACTGCACTCTCAGCTGCCGTACAATCGGAGTTACTTATCTCTATATTTCTCTCTCAGAAACACAGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGTGCCGCCTCCGCTTATTGTTCAGATCCCCAAGTGA

Protein sequence

MEDNAWGEFCPLHTAAALARHRLSSCRRTLHSQLPYNRSYLSLYFSLRNTEVQPLHAVGEIVPPPLIVQIPK

Homology

[Close]

BLAST of PI0021142 vs. ExPASy TrEMBL
Match: A0A5D3CLX7 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005420 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 58/90 (64.44%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 4   NAWGEFCPLHTAAALARHRLSSCRRTLHSQLPY---------------------NRSYLS 63
           N    F PLHTAA LARHRLS+CRRTLHSQLP                      NRSYLS
Sbjct: 498 NPPSHFQPLHTAAPLARHRLSNCRRTLHSQLPQLCSSDELAAAPSFSRSFVSPSNRSYLS 557

Query: 64  LYFSLRNTEVQPLHAVGEIVPPPLIVQIPK 73
           LYFSLRNTEVQPLHAVGEI PP +IVQIPK
Sbjct: 558 LYFSLRNTEVQPLHAVGEIAPPSVIVQIPK 587

[Close]

BLAST of PI0021142 vs. ExPASy TrEMBL
Match: A0A0A0KJA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487730 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 56/88 (63.64%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MEDNAWGEFCPLHTAAALARHRLSSCRRTLHSQLP--YNR--------------SYLSLY 60
          MED   G   PLHTAAALAR RLS C RTLHSQLP  Y+               SYLSL 
Sbjct: 1  MEDGMPGA-GPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLS 60

Query: 61 FSLRNTEVQPLHAVGEIVPPPLIVQIPK 73
          FSLR TEVQPLHAVGEI PP  IVQIPK
Sbjct: 61 FSLRITEVQPLHAVGEIAPPSFIVQIPK 87

[Close]

BLAST of PI0021142 vs. NCBI nr
Match: TYK12947.1 (transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-19
Identity = 58/90 (64.44%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 4   NAWGEFCPLHTAAALARHRLSSCRRTLHSQLPY---------------------NRSYLS 63
           N    F PLHTAA LARHRLS+CRRTLHSQLP                      NRSYLS
Sbjct: 498 NPPSHFQPLHTAAPLARHRLSNCRRTLHSQLPQLCSSDELAAAPSFSRSFVSPSNRSYLS 557

Query: 64  LYFSLRNTEVQPLHAVGEIVPPPLIVQIPK 73
           LYFSLRNTEVQPLHAVGEI PP +IVQIPK
Sbjct: 558 LYFSLRNTEVQPLHAVGEIAPPSVIVQIPK 587

[Close]

BLAST of PI0021142 vs. NCBI nr
Match: KAE8647485.1 (hypothetical protein Csa_003016 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 56/88 (63.64%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MEDNAWGEFCPLHTAAALARHRLSSCRRTLHSQLP--YNR--------------SYLSLY 60
          MED   G   PLHTAAALAR RLS C RTLHSQLP  Y+               SYLSL 
Sbjct: 1  MEDGMPGA-GPLHTAAALARLRLSGCPRTLHSQLPQIYSSHELPAAPSVSPSILSYLSLS 60

Query: 61 FSLRNTEVQPLHAVGEIVPPPLIVQIPK 73
          FSLR TEVQPLHAVGEI PP  IVQIPK
Sbjct: 61 FSLRITEVQPLHAVGEIAPPSFIVQIPK 87

The following BLAST results are available for this feature:

BLAST of PI0021142 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLX7	2.7e-19	64.44	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KJA2	3.4e-14	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487730 PE=4 SV=1	[more]

BLAST of PI0021142 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12947.1	5.6e-19	64.44	transcription termination factor MTERF5 [Cucumis melo var. makuwa]	[more]
KAE8647485.1	7.0e-14	63.64	hypothetical protein Csa_003016 [Cucumis sativus]	[more]

BLAST of PI0021142 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021142.1	PI0021142.1	mRNA