PI0020958 (gene) Melon (PI 482460) v1

Overview


Name	PI0020958
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr11: 8013280 .. 8016736 (-)
RNA-Seq Expression	PI0020958
Synteny	PI0020958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACATGAAAAAGTTGAGGTAAGGGTGGTCAATTACACTGTATTTGTGCATTCTGCCTGTGTATAACTCTATCTTTACTCATATCTGTTAATTGAAGCTATGCATTGGGATACCTTATGTTGAAATCAATAACATAAATTTGAAGTATATTGTATTTATAAAGTATGTTGCATTGTTCTGCTTGTCGGACTGATAGTTTTCCTATGTATTGCTTATGTGTAACTTTTTTGGGCCATTGACTGTCTTGTACAATTATAACTTAAAATTGATTACACATTTATATTAGGACTTCGTATACCTCATGTGTTCAACACGGCGAAATGAACCCCTCAAGATAAATCTCCAAACTAAAAGCATTGTAATCAATAAGATCAACGAAAATCTGGGAGAAACTTTGACAAACAAGTTCAAACAAGGAATACTTGGACATTTCCTTGATTTCTCAATCACAAACCAGTCATCCTAACTCCTATTGCACCTTATCCAAAAATGTGCAAACCCAAGTCAACCACCCAACGTAAACTTAATTTGTTGATAGGAGGGAGAGTGTTGAAATTGGTTTGAGAGAATTGGCATTAATAACAGGACTGAACTGTCATGAAATACCAAAGGTTAACAAGGAAGAGATTAAAGGGGACAATCATTTAAGGAAAGTGTACTTTGAGAGCCTAAAAACCGTTACAAGACAATACCTAAACATTATGTTTAACATAACCACCGTTGGGACTGACGATGATCGCCTAAAGATGGCAAAGTTATATTTTCTTAAAAGCTTCCTGATCACGAAACAAGAGAATCTAAATATAGAATGGGATATATTCTTAGGTTGATGACGACGAACTGTTTGACACCTACCCATGGGGTAGGGTGGCATTTGAGCTTTTTGTTGAATTTATGAATAGAGTTGCGTCTAATAAAGAGCAGACAGGAATTTCTATGGGAGGGTTTATATTTCCAATCCTTGCTTGAGCATACAAGGTGATACCAACTTTGAGTTCCCCGCCCAAAGAAGGATTTCCAATCAAATGCCTAGAATCATCAATTACGCTACAGATACAAAGCCAAAGTGGAAGGACTTGAAACATAAAGTTTTTTATTCTCCAACAGTATGGAACTCTGGAATCAAGAGTTAGTGTCTCCCCTTATATACTGCTTTGATAATTAATAACTGGTTTTTTTTTGTCCTACCAGCTTGAAGTATGGCCACTACTTGCTACACCTGATGAAGCAACAATGTCATACTTTGCACCCTTCCTTGAGGCTGAAAAAATGGTTCTACAAGAGGCTGAAGATGAAATCAGACGGAGTCAACCATTGGAAAGAGTGGCTCAGATGTCATTGAATAGAGGTATGCCCTTTACAACGCATTGGCTATTCGGTACACTCCTATTCCTTAAGATTGATTAGCTAAAGTTTCTATTATTAATGTACCAAATACAATATACTTTATTCTTTGGAGTACAACAATGTAGATATTATACCTTCTCGTCTTGTTGTGGATGACTCTTGCTCTTCATTTGTTGGTTTCACAAATTTTTTTTGGTAGCCTACACGTTTGTTTGGATTATAATTACATTGTATTTCTTAAAAATGTCTTCTTTTAAAAAAAAATGGATTACCAAGCATTCATCCTTGGTTTTTTCTGCACAACAATCTCTTCTTTTGGAGGTTCATTCCTTCTCCTCTTCTTGGAATAGAGGCATGCCTTTTACAACCATTTGTCTTTTGGTCTAACTCGACATCTATCCTTTACTTTCTAGTTTCTTCTTAGAGCTAAATACTCTGTCTCATTTTCCATGGTGCTAACTGCTCTGATACCAAGTTGTCACACCTCCTCCCGAACTATTTTCTAGCTTAGTCTGGAAGACAACGTGAAGTTGACTGACATCGTTCTCCTCTAACAATACCTGCTGACCCTACTGAACTCTTGAACCTGATAAACAAGCTAATCTTATACATAATTACTTTATATGCAACACAACACAGCGAAACCTAGATAACCCATAGGCATACATGAAGTGTAGCCCTGGAATAACTCACTCAACAATTAAACCGGAGAAAGACACCATACCCAAAATGATATCCACCAAGGTTTACACAACAACACCAACCAAAACTTACACAAACTGTACTTATCTAAATCTTACAAGACATATACAACAGAATAAAACAGACTATATGTACAACTCCAACCACGTAATGGCTAACAATCTGGGACCTTCCAGCAAATTAAGGCAGCCTATCAGGAACCGAGAGCTCGATCTCTACTTAAAAAGTGGGAAAACATTTTGAAAGAGTATGCTATAAAGCCCAGTGAGTGACTAAATTTAAAACTTTAAATCTAGAAATCAGAGCACACGAAAACTTTACACATATAAATCTATTTAATCAAAACCTTAAGTATAAACGTGTAACAATAACAATTTCCCCCAATACTCAGCAAGTTTGTCATTGGTATCTAGCAAGTCATATCAAATAAATTAAACATTTTAACTAACATGACAAATTTATGTTGTGTAGGGCACGCCTAGTACAACTAACGTTTACTAGCTCTACAATGTAGTGGGGCCTGCCTAGTGTCACGAACATGCTTGTCCAGGGCGTTGTTTGCCTATGGCAGTATGCTCAAACATCTCCACACCACCTTACTTTATGCTTTCCTTTACTTTCCATGTCGCTTTATGTTTTCCTTTACTTTTCATGTCGCTTTCTTTTACTTTCCATGTGGCTTTCTTTTACTTTCTATGTCGCTTAGTGACATTTTGCACATTTTGATATGCAAGCCTGGCAGATCATAAAATGTTCAAAATGTACTATAGGGGAGTACCATCAGTCACATCCCCGACTAAGCTTTGTCGCACTCTTTGCAATCTAAGCTTTCCTTGCAATTGGCAGTCTTCAAAGCTTTCTTTAATGATGTTTTCAACAATTTGCTTTCTCTCTCACGTTTTATAAAACCATTTTCTCTCAAAACGTGAAGGGAGGCTACATCATTCCGGAAGTTTGTTTGGGGGTTTCGAATTTCGAACGGCTGACTTGTTCATCGAGCTAGAACAAGTGGCCCACAATCGCTTGCCTCGTCTTTGAAAGGCTACGATTGTGACAAGTGGTATCAGAGCCTCATTGGCTTATTGACGGTTGAGACACAGACATGTCTACAACGAAACAGATGGGCAAGGCCCACGCAGACCAATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAAATTCCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGACGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGGCACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTTGGGACAGTTCAATGGGCTCTGTTGCCCACATAGAAGAATGGGTTGGCGAGTAG

mRNA sequence

ATGACACATGAAAAAGTTGAGCTTGAAGTATGGCCACTACTTGCTACACCTGATGAAGCAACAATGTCATACTTTGCACCCTTCCTTGAGGCTGAAAAAATGGTTCTACAAGAGGCTGAAGATGAAATCAGACGGAGTCAACCATTGGAAAGAGTGGCTCAGATGTCATTGAATAGAGACATGTCTACAACGAAACAGATGGGCAAGGCCCACGCAGACCAATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAAATTCCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGACGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGGCACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTTGGGACAGTTCAATGGGCTCTGTTGCCCACATAGAAGAATGGGTTGGCGAGTAG

Coding sequence (CDS)

ATGACACATGAAAAAGTTGAGCTTGAAGTATGGCCACTACTTGCTACACCTGATGAAGCAACAATGTCATACTTTGCACCCTTCCTTGAGGCTGAAAAAATGGTTCTACAAGAGGCTGAAGATGAAATCAGACGGAGTCAACCATTGGAAAGAGTGGCTCAGATGTCATTGAATAGAGACATGTCTACAACGAAACAGATGGGCAAGGCCCACGCAGACCAATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAAATTCCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGACGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGGCACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTTGGGACAGTTCAATGGGCTCTGTTGCCCACATAGAAGAATGGGTTGGCGAGTAG

Protein sequence

MTHEKVELEVWPLLATPDEATMSYFAPFLEAEKMVLQEAEDEIRRSQPLERVAQMSLNRDMSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE

Homology

[Close]

BLAST of PI0020958 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V E
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQE 102

[Close]

BLAST of PI0020958 vs. ExPASy TrEMBL
Match: A0A5A7T3M3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002020 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V E
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQE 102

[Close]

BLAST of PI0020958 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MSTTKQ+GK  AD+LV+++EQM YL+E+ D++ FL+ R+EE+ EKADAIDAVT RLDGLP
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 121 IKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELLTRV TLE K  RT NYE  DSS   V+HIEE V E
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVE 100

[Close]

BLAST of PI0020958 vs. ExPASy TrEMBL
Match: A0A5D3DYI1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00580 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS+    GKA  D+LV++EEQMLYL+E+P+++RFLE R+EE++EKAD IDAV GR+ GL 
Sbjct: 1   MSSANPSGKAQRDRLVELEEQMLYLVEVPNSIRFLESRLEEIAEKADTIDAVAGRVKGLS 60

Query: 121 IKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELL RV TLE K GRT ++ER DSS GSVAHIEE V E
Sbjct: 61  IQELLARVDTLEGKVGRTGSHERGDSSTGSVAHIEEHVQE 100

[Close]

BLAST of PI0020958 vs. ExPASy TrEMBL
Match: A0A5D3BQN3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001060 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++   GKA  D+LV+IEEQMLYL+E+PD++R+LE R+EE+SEKAD IDAV GR++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELL RV  LE    A RT+NYER +SS G  AH+EE VGE
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGE 102

[Close]

BLAST of PI0020958 vs. NCBI nr
Match: KAA0037573.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-26
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V E
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQE 102

[Close]

BLAST of PI0020958 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-26
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V E
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQE 102

[Close]

BLAST of PI0020958 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-26
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MSTTKQ+GK  AD+LV+++EQM YL+E+ D++ FL+ R+EE+ EKADAIDAVT RLDGLP
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 121 IKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELLTRV TLE K  RT NYE  DSS   V+HIEE V E
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVE 100

[Close]

BLAST of PI0020958 vs. NCBI nr
Match: TYK28632.1 (uncharacterized protein E5676_scaffold2030G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-26
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS+    GKA  D+LV++EEQMLYL+E+P+++RFLE R+EE++EKAD IDAV GR+ GL 
Sbjct: 1   MSSANPSGKAQRDRLVELEEQMLYLVEVPNSIRFLESRLEEIAEKADTIDAVAGRVKGLS 60

Query: 121 IKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELL RV TLE K GRT ++ER DSS GSVAHIEE V E
Sbjct: 61  IQELLARVDTLEGKVGRTGSHERGDSSTGSVAHIEEHVQE 100

[Close]

BLAST of PI0020958 vs. NCBI nr
Match: KAA0037518.1 (uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK01993.1 uncharacterized protein E5676_scaffold808G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-26
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 61  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 120
           MS++   GKA  D+LV+IEEQMLYL+E+PD++R+LE R+EE+SEKAD IDAV GR++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60

Query: 121 IKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWVGE 161
           I+ELL RV  LE    A RT+NYER +SS G  AH+EE VGE
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGE 102

The following BLAST results are available for this feature:

BLAST of PI0020958 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYE6	1.7e-26	62.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T3M3	1.7e-26	62.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3DUL1	2.3e-26	66.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DYI1	3.0e-26	64.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BQN3	3.9e-26	62.75	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0020958 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037573.1	3.6e-26	62.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03099.1	3.6e-26	62.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062476.1	4.7e-26	66.00	uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK28632.1	6.1e-26	64.00	uncharacterized protein E5676_scaffold2030G00580 [Cucumis melo var. makuwa]	[more]
KAA0037518.1	8.0e-26	62.75	uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of PI0020958 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020958.1	PI0020958.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding