PI0020923 (gene) Melon (PI 482460) v1

Overview


Name	PI0020923
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transcription elongation factor 1 homolog
Location	chr06: 8427606 .. 8430473 (+)
RNA-Seq Expression	PI0020923
Synteny	PI0020923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATACCACCCCTCCTCTTGTTTTTGGTTCCATTCTTCAATCCGACCAGCGGTACGATTGCAATTGCGAACGATAATCCCTCACAACTCGATCAGCGATCAGGTTCGTTCGTTTTCTTTGTTCTCTTTTCTTTTAGGGTTCGTAGTGCTAGGGTTTTATTAAGCTTTTCACTGGAATATTATTATGCCTTTTTCGTTACAGCCCGTAACCTAGGGTTCTACTTGTTTTTGTATCTTCTGGCGTGCTTCCGTTGAACGTTCTTTGCGTTTTTCATTGCGGTTGTTATTCTTTCATGTTCCTGTTTCATATTTTTTTTTGGTGGGGGTGGAGAATATAATTTTTGGAAATGCATATCTGGTTTTTCTGCGTGAAATTGAGTAACATGAAGTTACGTTATCCGTAGCGGCAGTTGAATTTTCCGGAAGTTTTGGTTATTATTTGTTTTTCATTCTTTCCATAGTCGATGAATGTCTATGATTTTGTAGGGAAGTGATACTTGCATCTCTAGTACTGTTTTACCTAATTGCGGTGTTTCATGAATTGGGTATGAACGTTTTGGGATGATGTGTACGGATGATGGATATGAGTTTTACTGTATGAGGTTTGGTAGCTTATTGATTGTGCTTTCTATGCTAGAAAGATCTATTATTTATATCCTTTAAGTTTGATTACGGCTCTCATTTTGAAGACTTATTGATATTGTTATTGTTATGGATGTGAACAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTCTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTCGAATGTCGCATGTAAGTTTGCATTTTGTTCCTCTTGGGTTCTTGTAACACGCGAGGTTGGGAGGGATATGTTATAAGGACTTGAGTATTTTCGTGGCATTGTGGAAAGGCTGGACCGATGAATGTGTATGGTATTATGTAACTTGGCTCATGGACTAGTCTCTCTGTCTAGGTGCCTCGTTTGTTTTGCATTCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGAGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACCATTACAGGTATTGTCTTTGAAAACTCTTTTTCGCTATCTGTTGTCTGTGTTTTACACCGCGCTTTATACTGTGTTGCAATGGAAGCACAAACAGTTTTTGGTTTTTTAGGTTTCTTCTTTTAAAGTATTTTTTATGAATATTTTTGTCCTTCTGGAGCAGTGTTTGTTTGATCTGAACTATAATTAGTGCACGGGAGTATAGGATTGAACCCCATTTTCTCTGTGCTCAAATTGATAGATGAATGGAAGCTTTGTCATGCAGTTGTTCCACCTTCCATCATCACTAGTTCTTTGTTCCGGTTGTAGATAGTCTATCAGATGAAAATCCATTCAAGTGTGTTTAGGGCATCGTATGTAATTCAGGTGAATTGAGTTGTCTGTGTCTAATCCAGGGCGTATCGTTTGTTTTCATTTGTCTGTTGTAAGACCCCTAGTTAAGGAAATATTAGGATTAGTAGTGTGGTTACTAGAAGGGGCAATTAGTAAATAGCTAAAAAGTTTGTTAGGCCTTAGTTATAAATAGAGGGAGTGCTGTTGGGAGAAGGGTGTGAAGAATTTTGTGGGATTTCCTTTGTGGAAGGTTGGAAGAGACTGCTCTCTCGACAGGCTAGGTTATCTTGTTACTTTTCTTATGATATTACAATATATTTCCGTATTTGAATGTTCTTGAGTTTTTGTGTGTGTGTGTGTGTGTTTTCTTTAGTGGTTCTTTGTTTGGTGATATCCTAACATCACATATAAATTTAGTTTTACTAACATTTCAATTCTTTTATTTTGCAGCCTTGAGTGAGGCAATAGACATGTAAGTAAAATTTTAAAGCTACTTGTTTTTGTCAACATTTGTTGTTGCTCTTTAGTTTTTCAGTTGACATGGTGTTGTTTTGCTTTTGACCAGATATAGCGAGTGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGGGAAGTATGCAGCTTGGTGTTTTTCTATGGAAACGAAGCTCGCTAGTTCGAAGTTCCTCTTATGAACCTAAATTAAGAGAGGGGGTCTTACTGGTAGGTATAACAACACTTCCACCCTCCACCCTCGTAGCGGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTACCGGCTTGCACTTGACTTTATTTTGGATTCTCACGTATGGGTAACTTTCTTTTAAGATTTTCAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTCGGATGGAGATTGGGGGTTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGGATGTTACGAAAGATTAATGGTTGTTATTTCATGCCACAAGACTTTTGAAATTGTTATATACTGATATTTTTTAATTGAGGATATGGAGTTTGCGTATTCATAAATTGTTCGGAGCCAAGACTTTCCAAACTTGGCTGTTTAGACCTGACGTTTTTAAAGTGCTTTTAAGCATATTCTTTTTAAACCATTTGCTACATTAATGTGGATATATAATTCTTTTTGTGTTCAATAAATCATCTCCAGCTCTGACATTTGGTCTATTACGTCCATTTATTAGAACAGGGCTCTAGTAGATTGGGATTGGATGGAACTACTTTTGACTTATGGAGTATAATGCTAATTATGTATAGATAATGGTATGAAGATCTAAAAGTTTATATATAGAGATTTTGTGTAGAAAATTAGTGGTGTATTTAGTAAACCCG

mRNA sequence

ATAAATACCACCCCTCCTCTTGTTTTTGGTTCCATTCTTCAATCCGACCAGCGGTACGATTGCAATTGCGAACGATAATCCCTCACAACTCGATCAGCGATCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTCTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTCGAATGTCGCATTGATATGAAGAACCTGATTGGAGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACCATTACAGCCTTGAGTGAGGCAATAGACATATATAGCGAGTGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGGGAAGTATGCAGCTTGGTGTTTTTCTATGGAAACGAAGCTCGCTAGTTCGAAGTTCCTCTTATGAACCTAAATTAAGAGAGGGGGTCTTACTGGTAGGTATAACAACACTTCCACCCTCCACCCTCGTAGCGGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTACCGGCTTGCACTTGACTTTATTTTGGATTCTCACGTATGGGTAACTTTCTTTTAAGATTTTCAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTCGGATGGAGATTGGGGGTTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGGATGTTACGAAAGATTAATGGTTGTTATTTCATGCCACAAGACTTTTGAAATTGTTATATACTGATATTTTTTAATTGAGGATATGGAGTTTGCGTATTCATAAATTGTTCGGAGCCAAGACTTTCCAAACTTGGCTGTTTAGACCTGACGTTTTTAAAGTGCTTTTAAGCATATTCTTTTTAAACCATTTGCTACATTAATGTGGATATATAATTCTTTTTGTGTTCAATAAATCATCTCCAGCTCTGACATTTGGTCTATTACGTCCATTTATTAGAACAGGGCTCTAGTAGATTGGGATTGGATGGAACTACTTTTGACTTATGGAGTATAATGCTAATTATGTATAGATAATGGTATGAAGATCTAAAAGTTTATATATAGAGATTTTGTGTAGAAAATTAGTGGTGTATTTAGTAAACCCG

Coding sequence (CDS)

ATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTCTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTCGAATGTCGCATTGATATGAAGAACCTGATTGGAGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACCATTACAGCCTTGAGTGAGGCAATAGACATATATAGCGAGTGGATCGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

Homology

[Close]

BLAST of PI0020923 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-41
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
           AL+E IDIYSEWIDECERVNN+EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of PI0020923 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-38
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of PI0020923 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALSEAIDIYSEWIDECERVNN 83
           +LS+ +D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of PI0020923 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of PI0020923 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of PI0020923 vs. ExPASy TrEMBL
Match: A0A0A0LAG5 (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of PI0020923 vs. ExPASy TrEMBL
Match: A0A1S3C2B7 (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of PI0020923 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.6e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of PI0020923 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLE+DAA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of PI0020923 vs. ExPASy TrEMBL
Match: A0A6A1W9X5 (Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR2G018503 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of PI0020923 vs. NCBI nr
Match: XP_004146241.1 (transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >KGN57642.1 hypothetical protein Csa_011748 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.0e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of PI0020923 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 8.8e-43
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTI
Sbjct: 39  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDLKNLIGEASCRICQESFSTTI 98

Query: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 89
           TALSEAID+YSEWIDECERVNNLEDDAA
Sbjct: 99  TALSEAIDVYSEWIDECERVNNLEDDAA 126

[Close]

BLAST of PI0020923 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 180.3 bits (456), Expect = 7.5e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of PI0020923 vs. NCBI nr
Match: KAF7803378.1 (transcription elongation factor 1-like protein [Senna tora])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
           ALSE IDIYSEWIDECERVNNLEDD A
Sbjct: 61 NALSEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of PI0020923 vs. NCBI nr
Match: XP_028780339.1 (transcription elongation factor 1 homolog [Prosopis alba])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSE ID+YSEWIDECERVNNLEDD A
Sbjct: 61 TALSEPIDVYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of PI0020923 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of PI0020923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	1.3e-41	90.70	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	1.4e-38	86.05	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	3.7e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	6.4e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	6.4e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of PI0020923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG5	1.5e-43	100.00	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
A0A1S3C2B7	1.5e-43	100.00	Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606...	[more]
W9R774	3.6e-42	96.59	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A2P5DXC0	1.1e-41	94.32	Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
A0A6A1W9X5	1.1e-41	94.32	Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR...	[more]

BLAST of PI0020923 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146241.1	3.0e-43	100.00	transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PRED...	[more]
XP_038896920.1	8.8e-43	97.73	transcription elongation factor 1 homolog [Benincasa hispida]	[more]
XP_010090451.1	7.5e-42	96.59	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
KAF7803378.1	1.3e-41	96.59	transcription elongation factor 1-like protein [Senna tora]	[more]
XP_028780339.1	1.3e-41	95.45	transcription elongation factor 1 homolog [Prosopis alba]	[more]

BLAST of PI0020923 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	9.7e-40	86.05	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..88
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..81
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 e-value: 4.3E-31 score: 106.8
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..88
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 16..82 e-value: 1.4E-29 score: 104.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020923.1	PI0020923.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity