PI0020911 (gene) Melon (PI 482460) v1

Overview


Name	PI0020911
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Patatin
Location	chr12: 4040841 .. 4041965 (-)
RNA-Seq Expression	PI0020911
Synteny	PI0020911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCCTTCAGGAGAAAGGACCCTACAACATCTCACATCCTTCATCCCAAAACTTTCTTTCCATTTCTTCAATTTTACAACATCAAAACGAATGCAACATAATAAACCCACCAACACATTCTACAAATCCCATTACGGAATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGAGCTGAAATGGCTTCTTCTGGCTGTAGAAGTTCACCATCTACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGAAGAAGCTAACAAGCAATTGCTTCGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATAAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGTAGATGGTGATGGATGTTTCATAATCCTCAGAATATGTATCATGAGGTCAGGATCTGCAAGAGAAGCTAACAAGCAGCTTTTCTTAAATGTGAGTTGTTCGATGTTGCTGATGCTTTATATGGTTTGTGTTTCCGAATTCTACAAAGGAAACTTCCTAGGATTTCCATTCCGATGACGAGCTACAGAGAAAGGGAACCAATTAGCTGTTTCAAGTTTCAACCATCAAGGTACAATCCAGTTTAGGAGAAAATATTCCATTGTATGGAAGAACTGTGGCTCTTCAGATGTTTCTCCTTGCAGGTCCATGAGAGAGAGAAGGGAGAGGGAAAGAATTAGTGCAGAGATGTAATATAGTTGTGGAAAATATAAGAAATTCGTCAATTTTTTTTATCTTCATTACACTTTCCTGCCACCCCCATACACCTCAGATTCAAGAATGAGCTAACACAATTGCAACTCCCTCCGGGAATGACAATAGCATAAATGCTGTTGGTATGCAAGCATTCCACTACGAACAACCCAACTCAGTACGGGATCTCGCTGAGCATATGTAATTATTTGCGTTTTTGGCCGTAGGGTTTAGAAAAGTGCAATATATATTTATATTTTTGACCCTAAAGTTTAGGAAAATGCAATATATAAACTCTCTAAT

mRNA sequence

AACCCCTTCAGGAGAAAGGACCCTACAACATCTCACATCCTTCATCCCAAAACTTTCTTTCCATTTCTTCAATTTTACAACATCAAAACGAATGCAACATAATAAACCCACCAACACATTCTACAAATCCCATTACGGAATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGAGCTGAAATGGCTTCTTCTGGCTGTAGAAGTTCACCATCTACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGAAGAAGCTAACAAGCAATTGCTTCGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATAAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGTAGATGGTGATGGATGTTTCATAATCCTCAGAATATGTATCATGAGGTCAGGATCTGCAAGAGAAGCTAACAAGCAGCTTTTCTTAAATGTGAGTTGTTCGATGTTGCTGATGCTTTATATGGTTTGTGTTTCCGAATTCTACAAAGGAAACTTCCTAGGATTTCCATTCCGATGACGAGCTACAGAGAAAGGGAACCAATTAGCTGTTTCAAGTTTCAACCATCAAGGTACAATCCAGTTTAGGAGAAAATATTCCATTGTATGGAAGAACTGTGGCTCTTCAGATGTTTCTCCTTGCAGGTCCATGAGAGAGAGAAGGGAGAGGGAAAGAATTAGTGCAGAGATGTAATATAGTTGTGGAAAATATAAGAAATTCGTCAATTTTTTTTATCTTCATTACACTTTCCTGCCACCCCCATACACCTCAGATTCAAGAATGAGCTAACACAATTGCAACTCCCTCCGGGAATGACAATAGCATAAATGCTGTTGGTATGCAAGCATTCCACTACGAACAACCCAACTCAGTACGGGATCTCGCTGAGCATATGTAATTATTTGCGTTTTTGGCCGTAGGGTTTAGAAAAGTGCAATATATATTTATATTTTTGACCCTAAAGTTTAGGAAAATGCAATATATAAACTCTCTAAT

Coding sequence (CDS)

ATGCAACATAATAAACCCACCAACACATTCTACAAATCCCATTACGGAATGGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCGCTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAACCTCCATCAGCTCACAGAGGTCTCAAGGAGCTGAAATGGCTTCTTCTGGCTGTAGAAGTTCACCATCTACCTTCTGGCAATCTTTAATGTCATGGCGAAGGAAGAAGAAGCTAACAAGCAATTGCTTCGTTACAAAAATGTGCTCGACTTTTGATGCTTCGAGAAGCAATCGAATAAATAAGATTTCTGGGTTGAGTTATACGATCCTTCAGAATGATTTCCATAGCTTGCACATGTAG

Protein sequence

MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAEMASSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDFHSLHM

Homology

[Close]

BLAST of PI0020911 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAE 60
           MQHNKPTNTFYKSHYGMAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQG E
Sbjct: 1   MQHNKPTNTFYKSHYGMAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPE 60

Query: 61  MASSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQN 120
           MASSGCRSSP TFWQSLMSWRRK KLTSN FVTKMCSTFDASRSNR+NKISGLSYTILQN
Sbjct: 61  MASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQN 120

Query: 121 DFHSLHM 128
           DFHSLHM
Sbjct: 121 DFHSLHM 127

[Close]

BLAST of PI0020911 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAE 60
           MQHNKP NTFYKSHYGMAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQG E
Sbjct: 1   MQHNKPNNTFYKSHYGMAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPE 60

Query: 61  MASSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGL 114
           MASSGCRSSP TFWQS+MSWRRKKKLTSN F+TKMCSTFDASRSNR+NKISG+
Sbjct: 61  MASSGCRSSPPTFWQSIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of PI0020911 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 17  MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAEMASSGCRSSPSTFWQS 76
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQG EMASSGCRSSP TFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 77  LMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDFHSLHM 128
           +MSWRRKKKLTSN F+TKMCSTFDASRSNR+NKISGLSYTILQNDFHSLH+
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of PI0020911 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.0e-37
Identity = 88/128 (68.75%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAE 60
           MQH+KP+ TF K    MAATAPVAIGTRGT+GSLVKKEIDYFAKIE E      R  G +
Sbjct: 1   MQHSKPSTTFCKFLEEMAATAPVAIGTRGTVGSLVKKEIDYFAKIEFE------RCSGND 60

Query: 61  MASSGCR-SSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQ 120
           MASS  R SSP TFW ++MSWRRKKK   N F+TK+CS FD S SNR+NKISG +YTILQ
Sbjct: 61  MASSSRRSSSPPTFWHTVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQ 120

Query: 121 NDFHSLHM 128
           NDF+SLHM
Sbjct: 121 NDFNSLHM 122

[Close]

BLAST of PI0020911 vs. ExPASy TrEMBL
Match: A0A2N9IT24 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55316 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.7e-21
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 5   KPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQG--AEMA 64
           K + T  K    MAA APVAIGTRGT+GSLV+KEI+YF K+E++   SS++ QG   +MA
Sbjct: 4   KASTTNTKFPEKMAAIAPVAIGTRGTVGSLVRKEIEYFKKVEIDQCGSSRKPQGQIVDMA 63

Query: 65  SSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDF 124
           S+  RS PS  W  +M+WRRKK   S+  +  MCS  + S SNR+N+I G +Y IL+NDF
Sbjct: 64  STSGRSRPS-LWFLIMTWRRKKGRGSSGILPSMCSVVEVSESNRLNRIPGYNYRILKNDF 123

[Close]

BLAST of PI0020911 vs. NCBI nr
Match: KAA0056869.1 (hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372.1 hypothetical protein E5676_scaffold248G005900 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.7e-51
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAE 60
           MQHNKP NTFYKSHYGMAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQG E
Sbjct: 1   MQHNKPNNTFYKSHYGMAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPE 60

Query: 61  MASSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGL 114
           MASSGCRSSP TFWQS+MSWRRKKKLTSN F+TKMCSTFDASRSNR+NKISG+
Sbjct: 61  MASSGCRSSPPTFWQSIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of PI0020911 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-49
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 17  MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAEMASSGCRSSPSTFWQS 76
           MAATAPVAIGTRGTIGSL+KKEIDYFAKIELETSISSQRSQG EMASSGCRSSP TFWQS
Sbjct: 1   MAATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 77  LMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDFHSLHM 128
           +MSWRRKKKLTSN F+TKMCSTFDASRSNR+NKISGLSYTILQNDFHSLH+
Sbjct: 61  IMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of PI0020911 vs. NCBI nr
Match: KGN64543.2 (hypothetical protein Csa_013063 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 105/111 (94.59%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 17  MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAEMASSGCRSSPSTFWQS 76
           MAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQG EMASSGCRSSP TFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 77  LMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDFHSLHM 128
           LMSWRRK KLTSN FVTKMCSTFDASRSNR+NKISGLSYTILQNDFHSLHM
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of PI0020911 vs. NCBI nr
Match: XP_011648422.1 (uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 105/111 (94.59%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 17  MAATAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGAEMASSGCRSSPSTFWQS 76
           MAA APVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQG EMASSGCRSSP TFWQS
Sbjct: 1   MAAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQS 60

Query: 77  LMSWRRKKKLTSNCFVTKMCSTFDASRSNRINKISGLSYTILQNDFHSLHM 128
           LMSWRRK KLTSN FVTKMCSTFDASRSNR+NKISGLSYTILQNDFHSLHM
Sbjct: 61  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of PI0020911 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MQHNKPTNTFYKSHYGMAATAPVAIGTRGTIGSLVKKEIDYFAKIELE--TSISSQRSQG 60
           MQHNKP+ TF KSH  MAATA VAIGTRGTIGSL+KKEIDYFAKIELE  +S SSQR Q 
Sbjct: 1   MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRPQA 60

Query: 61  AEMASSGCRSSPSTFWQSLMSWRRKKKLTSNCFVTKMCST-FDASRSNRINKISGLSYTI 120
            +MA+SGC S P TFW S+MSWRRKKK + + FV K+CS+ FD S SN++NKISG +YTI
Sbjct: 61  PDMATSGCSSLPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTI 120

Query: 121 LQNDFHSLHM 128
           LQN+FHSLHM
Sbjct: 121 LQNNFHSLHM 130

[Close]

BLAST of PI0020911 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 21  APVAIGTRGTIGSLVKKEIDYFAKIE-LETSISSQRSQGAEMASS----GCRSSPSTFWQ 80
           AP+AIGTRGTIGSLV+KEIDYF            +R    E  ++       SS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 81  SLMSWRRKKKLT---SNCFVTKMCSTFDASRSNRINKISGLSYTILQND 122
           S   WR+KK+ T      F   MCS  + S  NR   + G +Y IL++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of PI0020911 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX43	7.2e-60	95.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A5A7UTL1	2.8e-51	92.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DSE9	2.0e-49	92.79	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A6J1CHB1	5.0e-37	68.75	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2N9IT24	8.7e-21	51.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55316 PE=4 SV=1	[more]

BLAST of PI0020911 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056869.1	5.7e-51	92.04	hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372...	[more]
XP_016898893.1	4.1e-49	92.79	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]
KGN64543.2	1.2e-48	94.59	hypothetical protein Csa_013063 [Cucumis sativus]	[more]
XP_011648422.1	1.2e-48	94.59	uncharacterized protein LOC105434455 [Cucumis sativus]	[more]
KAG7019678.1	2.0e-40	71.54	hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of PI0020911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.2e-09	39.45	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 3..126
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020911.1	PI0020911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm