PI0020676 (gene) Melon (PI 482460) v1

Overview


Name	PI0020676
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr02: 4023338 .. 4024320 (-)
RNA-Seq Expression	PI0020676
Synteny	PI0020676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAATGTACGCCACCACTGACGGTGAGAAAATTCACTACATAGAGATGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACGCCCAATTAATTCTACTACTACCCGTGTATTACGTATTATGTATTGTGTATTGTGTGTCCTGTGTATTGTGTATTGCGTATTCTGTGTAGTTCAGTACGATGACAATGTAATGTATGTGTTAACATTTCGATTGTTGACGTAAATTAATAATTCGCACCTCACTTAGTTTGTGACATTAATTTATTGTTATTTTTTTCCTAGTATGGCAACGTCTTCAAGGACCCCGAAGCACCACTGCACGAAAAAGGAGGATTCCGTCCTCATTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAGGTCGGATAATGGAACTTTTAAACCCGAATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGCCCGGACATAACATAACGGCTACGACAATAAATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAACGATATCTGAGATGAGGGGCCCGACGTGTAGTAGATTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTTGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCTATTACTGTTCCTTTCTAATTATAAATTGTCTAATTTGTTACCACAACAACACTTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGGCGATGTTGGGTCGAACATGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAATCCGACGATGTACAATTAG

mRNA sequence

ATGACGAACGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAATGTACGCCACCACTGACGGTGAGAAAATTCACTACATAGAGATGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCATATGGCAACGTCTTCAAGGACCCCGAAGCACCACTGCACGAAAAAGGAGGATTCCGTCCTCATTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAGGTCGGATAATGGAACTTTTAAACCCGAATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGCCCGGACATAACATAACGGCTACGACAATAAATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAACGATATCTGAGATGAGGGGCCCGACGTGTAGTAGATTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTTGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGGCGATGTTGGGTCGAACATGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAATCCGACGATGTACAATTAG

Coding sequence (CDS)

ATGACGAACGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAATGTACGCCACCACTGACGGTGAGAAAATTCACTACATAGAGATGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCATATGGCAACGTCTTCAAGGACCCCGAAGCACCACTGCACGAAAAAGGAGGATTCCGTCCTCATTGAATGTCTGGTGGAGTTGGTATCTTCCGGCGGGTGGAGGTCGGATAATGGAACTTTTAAACCCGAATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGCCCGGACATAACATAACGGCTACGACAATAAATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAACGATATCTGAGATGAGGGGCCCGACGTGTAGTAGATTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTTGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGGCGATGTTGGGTCGAACATGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAATCCGACGATGTACAATTAG

Protein sequence

MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSRTPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTINCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMYN

Homology

[Close]

BLAST of PI0020676 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.6e-76
Identity = 144/234 (61.54%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTD-GEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSS 60
           MT  D   + DEGDS YATT   E I YIE ++ WSQWRD LA  MF+DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RTPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATT 120
           R P+H  T++E+  L+ECL+ELVS GGW+SDNGTF+P Y + L +M+AE++PG  + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKP 180
            I+CRIKT+KR FQ I+EMRGP CS FGWNDE KCI+AEK+LFD+WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNMP-PGFEGFAHYDGNDMENPTMYN 232
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P +Y+
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYS 229

[Close]

BLAST of PI0020676 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.2e-74
Identity = 138/231 (59.74%), Postives = 172/231 (74.46%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN DI + +DE DS +ATT  + IHYIE S+ WSQWRD LAE +         M +SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTI 120
            PKH  TK+E++ L+ECLVELV++GGWRSDNGTF+P Y + L +M+A ++PG NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 NCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           + RIK MKR F  ++EMRGP CS FGWNDE KCI+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMYN 232
           HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P MY+
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 530

[Close]

BLAST of PI0020676 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.8e-70
Identity = 129/233 (55.36%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN++I +++DEGDS YATT G++I+YIE+S+ WS+ RD+LA  MFSDWELR+ M +SSR
Sbjct: 118 MTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSR 177

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITAT-T 120
             KH  TK+E++ L+ECLVELVS+GGWRS+NGTF+  Y + LQ+M+ +++   NI  +  
Sbjct: 178 ASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLP 237

Query: 121 INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPF 180
           ++CR+K++K+   +   MRGP+CS FGWN++ +CIIAE+DLFD+WVKSHP A+GLL+K F
Sbjct: 238 MDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSF 297

Query: 181 PHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGF-EGFAHYDGNDMENPTMYN 232
           P+YDDL YVF +DRAT  R ETF DVGSN+   F +G    D  D + P MY+
Sbjct: 298 PYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYS 350

[Close]

BLAST of PI0020676 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.1e-69
Identity = 128/233 (54.94%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN++I +++DEGDS YATT G++I+YIE+S+ WS+ RD+LA  MFSDWELR+ M +SSR
Sbjct: 118 MTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSR 177

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITAT-T 120
             KH  TK+E++ L+ECLVELVS+GGWRS+NGTF+  Y + LQ+M+ +++   NI  +  
Sbjct: 178 ASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTNIQGSLP 237

Query: 121 INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPF 180
           ++CR+K++K+   +   +RGP+CS FGWN++ +CIIAE+DLFD+WVKSHP A+GLL+K F
Sbjct: 238 MDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSF 297

Query: 181 PHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGF-EGFAHYDGNDMENPTMYN 232
           P+YDDL YVF +DRAT  R ETF DVGSN+   F +G    D  D + P MY+
Sbjct: 298 PYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYS 350

[Close]

BLAST of PI0020676 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.1e-69
Identity = 130/231 (56.28%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           M   DI +++DE DS +AT+  + IHYIE S+ W++WRD+L E MFS+WELRN MA+S R
Sbjct: 53  MKTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLDEEMFSEWELRNDMASSLR 112

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTI 120
             KH+ TK+E++ L+ECLVELV++GGWRSDNGTF+P                        
Sbjct: 113 LLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG----------------------- 172

Query: 121 NCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
             RIK +KR F  I+EM GPTCSRFGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FP
Sbjct: 173 --RIKLLKRMFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFP 232

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMYN 232
           HYD+L YVFG+DRATGGRAE+F D+G N P G+E FA     D +   MY+
Sbjct: 233 HYDELSYVFGKDRATGGRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYS 258

[Close]

BLAST of PI0020676 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 144/234 (61.54%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTD-GEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSS 60
           MT  D   + DEGDS YATT   E I YIE ++ WSQWRD LA  MF+DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RTPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATT 120
           R P+H  T++E+  L+ECL+ELVS GGW+SDNGTF+P Y + L +M+AE++PG  + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKP 180
            I+CRIKT+KR FQ I+EMRGP CS FGWNDE KCI+AEK+LFD+WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNMP-PGFEGFAHYDGNDMENPTMYN 232
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P +Y+
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYS 229

[Close]

BLAST of PI0020676 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 287.7 bits (735), Expect = 8.7e-74
Identity = 138/231 (59.74%), Postives = 172/231 (74.46%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN DI + +DE DS +ATT  + IHYIE S+ WSQWRD LAE +         M +SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTI 120
            PKH  TK+E++ L+ECLVELV++GGWRSDNGTF+P Y + L +M+A ++PG NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 NCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           + RIK MKR F  ++EMRGP CS FGWNDE KCI+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMYN 232
           HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P MY+
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 530

[Close]

BLAST of PI0020676 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 5.8e-70
Identity = 129/233 (55.36%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN++I +++DEGDS YATT G++I+YIE+S+ WS+ RD+LA  MFSDWELR+ M +SSR
Sbjct: 118 MTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSR 177

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITAT-T 120
             KH  TK+E++ L+ECLVELVS+GGWRS+NGTF+  Y + LQ+M+ +++   NI  +  
Sbjct: 178 ASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLP 237

Query: 121 INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPF 180
           ++CR+K++K+   +   MRGP+CS FGWN++ +CIIAE+DLFD+WVKSHP A+GLL+K F
Sbjct: 238 MDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSF 297

Query: 181 PHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGF-EGFAHYDGNDMENPTMYN 232
           P+YDDL YVF +DRAT  R ETF DVGSN+   F +G    D  D + P MY+
Sbjct: 298 PYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYS 350

[Close]

BLAST of PI0020676 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-69
Identity = 128/233 (54.94%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           MTN++I +++DEGDS YATT G++I+YIE+S+ WS+ RD+LA  MFSDWELR+ M +SSR
Sbjct: 118 MTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSR 177

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITAT-T 120
             KH  TK+E++ L+ECLVELVS+GGWRS+NGTF+  Y + LQ+M+ +++   NI  +  
Sbjct: 178 ASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTNIQGSLP 237

Query: 121 INCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPF 180
           ++CR+K++K+   +   +RGP+CS FGWN++ +CIIAE+DLFD+WVKSHP A+GLL+K F
Sbjct: 238 MDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSF 297

Query: 181 PHYDDLCYVFGRDRATGGRAETFGDVGSNMPPGF-EGFAHYDGNDMENPTMYN 232
           P+YDDL YVF +DRAT  R ETF DVGSN+   F +G    D  D + P MY+
Sbjct: 298 PYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYS 350

[Close]

BLAST of PI0020676 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 6.5e-69
Identity = 130/231 (56.28%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSMYATTDGEKIHYIEMSSAWSQWRDELAERMFSDWELRNHMATSSR 60
           M   DI +++DE DS +AT+  + IHYIE S+ W++WRD+L E MFS+WELRN MA+S R
Sbjct: 53  MKTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLDEEMFSEWELRNDMASSLR 112

Query: 61  TPKHHCTKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTI 120
             KH+ TK+E++ L+ECLVELV++GGWRSDNGTF+P                        
Sbjct: 113 LLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG----------------------- 172

Query: 121 NCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
             RIK +KR F  I+EM GPTCSRFGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FP
Sbjct: 173 --RIKLLKRMFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFP 232

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNMPPGFEGFAHYDGNDMENPTMYN 232
           HYD+L YVFG+DRATGGRAE+F D+G N P G+E FA     D +   MY+
Sbjct: 233 HYDELSYVFGKDRATGGRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYS 258

[Close]

BLAST of PI0020676 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 41/144 (28.47%), Postives = 67/144 (46.53%), Query Frame = 0


Query: 62  PKHHCTKKEDSVLIECLVELVSSGGWRSDNGTF-KPEYHSHLQKMIAERMPGHNITATTI 121
           P +  T  E  VLIE + +      WR  +G   K    S L   + +R+ G N      
Sbjct: 13  PYNQWTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRL-GCNKNHKNY 72

Query: 122 NCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 181
             R+K +K  +Q+  +++    S FGW+ E K   A  +++  ++K+HP  K +  +   
Sbjct: 73  MSRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESID 132

Query: 182 HYDDLCYVFGRDRATGGRAETFGD 205
           H++DL  +FG   ATG  A    D
Sbjct: 133 HFEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of PI0020676 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-09
Identity = 35/133 (26.32%), Postives = 64/133 (48.12%), Query Frame = 0


Query: 67  TKKEDSVLIECLVELVSSGGWRSDNGTFKPEYHSHLQKMIAERMPGHNITATTINCRIKT 126
           T   D  LI+ LVE V++G  R         ++  +    A+    HN     +  R K 
Sbjct: 328 TPPMDYHLIDLLVEQVNNGN-RVGQTFITSAWNEMVTAFNAKFGSQHN--KDVLKNRYKH 387

Query: 127 MKRAFQTIS---EMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYD 186
           ++R +  I    E  G     F W+     +IA+ D++++++++HP A+    K  P Y 
Sbjct: 388 LRRLYNDIKFLLEQNG-----FSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYP 447

Query: 187 DLCYVFGRDRATG 197
           +LC++FG++ + G
Sbjct: 448 NLCFIFGKETSDG 452

[Close]

BLAST of PI0020676 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 7.5e-07
Identity = 20/77 (25.97%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 114 NITATTINCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKG 173
           N     +  R K+++R F  I  +       F W++E + + A+ +++  ++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 174 LLNKPFPHYDDLCYVFG 191
            + +P P+Y DLC + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0020676 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.0 bits (123), Expect = 7.5e-07
Identity = 20/77 (25.97%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 114 NITATTINCRIKTMKRAFQTISEMRGPTCSRFGWNDELKCIIAEKDLFDSWVKSHPAAKG 173
           N     +  R K+++R F  I  +       F W++E + + A+ +++  ++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 174 LLNKPFPHYDDLCYVFG 191
            + +P P+Y DLC + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0020676 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 4.5e-04
Identity = 16/52 (30.77%), Postives = 29/52 (55.77%), Query Frame = 0


Query: 145 FGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG 197
           F W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Sbjct: 89  FVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:

BLAST of PI0020676 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020676 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T091	2.6e-76	61.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCB5	4.2e-74	59.74	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7TJS2	2.8e-70	55.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	1.1e-69	54.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXX8	3.1e-69	56.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020676 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036924.1	5.5e-76	61.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	8.7e-74	59.74	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0043564.1	5.8e-70	55.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19779.1	2.2e-69	54.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035413.1	6.5e-69	56.28	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]

BLAST of PI0020676 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	1.6e-09	28.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	8.0e-09	26.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	7.5e-07	25.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	7.5e-07	25.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	4.5e-04	30.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 67..160 e-value: 9.4E-8 score: 33.0
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 56..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020676.1	PI0020676.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane