PI0020658 (gene) Melon (PI 482460) v1

Overview


Name	PI0020658
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CACTA en-spm transposon protein
Location	chr06: 9886977 .. 9887231 (+)
RNA-Seq Expression	PI0020658
Synteny	PI0020658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACAAACACCGGAGGCAATTATTTGTGAACGGGTTTTGGGAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACACAACCTCCAATGTCCAATGTGTTTGAGAAAGAAATTAGGGATAAGTATGAAAAGCTTCAAGCAGAGGTGACAAGCTTAAAGAAGGAAAATGCTATGTTGAAGTCAACAATTTCGGGCTTTCAAGATCAATTGACTAA

mRNA sequence

ATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACAAACACCGGAGGCAATTATTTGTGAACGGGTTTTGGGAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACACAACCTCCAATGTCCAATCTTCAAGCAGAGGTGACAAGCTTAAAGAAGGAAAATGCTATGTTGAAGTCAACAATTTCGGGCTTTCAAGATCAATTGACTAA

Coding sequence (CDS)

ATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACAAACACCGGAGGCAATTATTTGTGAACGGGTTTTGGGAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACACAACCTCCAATGTCCAATCTTCAAGCAGAGGTGACAAGCTTAAAGAAGGAAAATGCTATGTTGAAGTCAACAATTTCGGGCTTTCAAGATCAATTGACTAA

Protein sequence

MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLGWNTTSNVQSSSRGDKLKEGKCYVEVNNFGLSRSID

Homology

[Close]

BLAST of PI0020658 vs. ExPASy TrEMBL
Match: A0A5A7UKB8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001590 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLGWNTTSNVQSSSR--------GDK 60
           MQEEIRKSSEDG + TP+ II E+VL KRSGH KGLGW  T NV + +         GDK
Sbjct: 242 MQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATCTSTHVFEKDIGDK 301

Query: 61  L-----------KEGKCYVEVNNFGLSRSI 72
                       +E  CYVEVNNFGL RSI
Sbjct: 302 YEKLQTKVINLKEENACYVEVNNFGLPRSI 331

[Close]

BLAST of PI0020658 vs. ExPASy TrEMBL
Match: A0A5A7SMM8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00980 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLG 38
           MQEEI KSSEDG E TPEAIICE VLG R GH KGLG
Sbjct: 181 MQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 217

[Close]

BLAST of PI0020658 vs. ExPASy TrEMBL
Match: A0A5D3BM75 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLG 38
           MQEEI KSSEDG E TPEAIICE VLG R GH KGLG
Sbjct: 182 MQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 218

[Close]

BLAST of PI0020658 vs. NCBI nr
Match: KAA0055007.1 (uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLGWNTTSNVQSSSR--------GDK 60
           MQEEIRKSSEDG + TP+ II E+VL KRSGH KGLGW  T NV + +         GDK
Sbjct: 242 MQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATCTSTHVFEKDIGDK 301

Query: 61  L-----------KEGKCYVEVNNFGLSRSI 72
                       +E  CYVEVNNFGL RSI
Sbjct: 302 YEKLQTKVINLKEENACYVEVNNFGLPRSI 331

[Close]

BLAST of PI0020658 vs. NCBI nr
Match: TYK00374.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLG 38
           MQEEI KSSEDG E TPEAIICE VLG R GH KGLG
Sbjct: 182 MQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 218

[Close]

BLAST of PI0020658 vs. NCBI nr
Match: KAA0025491.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MQEEIRKSSEDGVEQTPEAIICERVLGKRSGHIKGLG 38
           MQEEI KSSEDG E TPEAIICE VLG R GH KGLG
Sbjct: 181 MQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 217

The following BLAST results are available for this feature:

BLAST of PI0020658 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKB8	9.9e-14	54.44	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SMM8	4.5e-06	81.08	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BM75	4.5e-06	81.08	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of PI0020658 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055007.1	2.0e-13	54.44	uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa]	[more]
TYK00374.1	9.2e-06	81.08	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0025491.1	9.2e-06	81.08	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0020658 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020658.1	PI0020658.1	mRNA