PI0020576 (gene) Melon (PI 482460) v1

Overview


Name	PI0020576
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	nucleolin
Location	chr06: 2421542 .. 2422447 (+)
RNA-Seq Expression	PI0020576
Synteny	PI0020576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCAAGGACGGTAAAGATAGGCGCGGCATCCTCCAAGGGTTTCCCGAGGGACGCCGAAGAAGCAATATCATCCGGCGGAAAGGGAGGTTGCGGAAGAGATGGTGAAGGTTTAGGAGGTCTCGGGGATTGAGCTTGAAACCAAGGAGGTTCGCGAGGAAGTCGCGATGCAGGAAAAAGCCCCGTCATATAACATAAGCCTGTTATTCCGAATAATCTGGTAGTTGTTGAGGAGAAACAACCGATTGCTATAGACGTCGAGGAGGTCGAACCTTCGCACGAAGTCAGATCGAATTCAAAACGATCTGTTCCTCGTAAAAGTAAGTACCGTCCTCTGAATTCGTGCACGTCGCCGTTAGGTTTAGTAATTGTTGGGGTTCTTATTTGTATGTGCGCTTAGAACTTTCTTCTGTTTTTCGAGCATTCCCTTTCAAAGCGATCTATATGGGGTGGACGTGCTTATACGACGAAGAAACTAGTAGTTTATCTAGGGAAAGTTTATCTTCTGAGGAGGGAAACAATCGTCCCAGGACAATGGTTATGTACTTGCGATGCAAGTTAATTATGATTTTTGGGAATTTCATCGTCTTAAATTGCCCTCATCTCCCTAGCTTATAGTTTGAGTTTTGTCTGTATAATGTTTGCGTATACAGACTAGAAGCTGTACGTTTTTCTATGCCAAGTTTCAGTACCACGTTTTGGTTCTTATTTTTTAATATACCCTGTGTGTTTTCTCGAGTGAATTTGTTGACCGGGATGGATCTTTAATCTACTTCTCGTTTCAGAAGAAGAAGAAGTAAAGGATGAAGAATATGGGAAGGACGAGAGCTTGGATCTTGAAGATAATGAGCCCGAATCAGAACCTGAGGAGGATGGAGGGTTTGAAACATTATGGAGTCGATAA

mRNA sequence

ATGCCTCCAAGGACGGTAAAGATAGGCGCGGCATCCTCCAAGGGTTTCCCGAGGGACGCCGAAGAAGCAATATCATCCGGCGGAAAGGGAGGTTGCGGAAGAGATGGTGAAGGTTTAGGAGTTGTTGAGGAGAAACAACCGATTGCTATAGACGTCGAGGAGGTCGAACCTTCGCACGAAGTCAGATCGAATTCAAAACGATCTGTTCCTCGTAAAAAAGAAGAAGAAGTAAAGGATGAAGAATATGGGAAGGACGAGAGCTTGGATCTTGAAGATAATGAGCCCGAATCAGAACCTGAGGAGGATGGAGGGTTTGAAACATTATGGAGTCGATAA

Coding sequence (CDS)

ATGCCTCCAAGGACGGTAAAGATAGGCGCGGCATCCTCCAAGGGTTTCCCGAGGGACGCCGAAGAAGCAATATCATCCGGCGGAAAGGGAGGTTGCGGAAGAGATGGTGAAGGTTTAGGAGTTGTTGAGGAGAAACAACCGATTGCTATAGACGTCGAGGAGGTCGAACCTTCGCACGAAGTCAGATCGAATTCAAAACGATCTGTTCCTCGTAAAAAAGAAGAAGAAGTAAAGGATGAAGAATATGGGAAGGACGAGAGCTTGGATCTTGAAGATAATGAGCCCGAATCAGAACCTGAGGAGGATGGAGGGTTTGAAACATTATGGAGTCGATAA

Protein sequence

MPPRTVKIGAASSKGFPRDAEEAISSGGKGGCGRDGEGLGVVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFETLWSR

Homology

[Close]

BLAST of PI0020576 vs. ExPASy TrEMBL
Match: A0A1S3AW67 (nucleolin OS=Cucumis melo OX=3656 GN=LOC103483455 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.4e-20
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIA+DV EVE SHEVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 82  VVEEKQPIAVDVGEVESSHEVRSDSKQSVPPKKEEEVKDEEYGKDERLDLEDNDPESEPE 141

Query: 101 EDGGFE 107
           EDGGFE
Sbjct: 142 EDGGFE 147

[Close]

BLAST of PI0020576 vs. ExPASy TrEMBL
Match: A0A6J1CZX0 (nucleolin OS=Momordica charantia OX=3673 GN=LOC111016019 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIAIDVEEVEP H+VRS+SK+SVP KKEEEVKD+EYGKDE LDLEDN+PESEPE
Sbjct: 84  VVEEKQPIAIDVEEVEPPHDVRSDSKQSVPPKKEEEVKDDEYGKDERLDLEDNDPESEPE 143

Query: 101 EDGGFE 107
           E GGFE
Sbjct: 144 EYGGFE 149

[Close]

BLAST of PI0020576 vs. ExPASy TrEMBL
Match: A0A0A0L6P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129610 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIA+DV EVE S EVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEP+
Sbjct: 82  VVEEKQPIAVDVGEVESSREVRSDSKQSVPPKKEEEVKDEEYGKDERLDLEDNDPESEPD 141

Query: 101 EDGGFE 107
           EDGGFE
Sbjct: 142 EDGGFE 147

[Close]

BLAST of PI0020576 vs. ExPASy TrEMBL
Match: A0A6J1IYN4 (nucleolin-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479663 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIAIDVEEVEPSHEVR  SK+S P + EEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 86  VVEEKQPIAIDVEEVEPSHEVR--SKQSAPPRNEEEVKDEEYGKDERLDLEDNDPESEPE 145

Query: 101 EDGGFE 107
           ED GFE
Sbjct: 146 EDAGFE 149

[Close]

BLAST of PI0020576 vs. ExPASy TrEMBL
Match: A0A6J1IQT6 (nucleolin-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479663 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIAIDVEEVEPSHEVRS  + + PRK EEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 86  VVEEKQPIAIDVEEVEPSHEVRS-KQSAPPRKDEEEVKDEEYGKDERLDLEDNDPESEPE 145

Query: 101 EDGGFE 107
           ED GFE
Sbjct: 146 EDAGFE 150

[Close]

BLAST of PI0020576 vs. NCBI nr
Match: XP_038895622.1 (heterogeneous nuclear ribonucleoprotein Q isoform X1 [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPI+IDVE+VEPSHEVRS+SK SVP KKEEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 82  VVEEKQPISIDVEDVEPSHEVRSDSKPSVPPKKEEEVKDEEYGKDERLDLEDNDPESEPE 141

Query: 101 EDGGFE 107
           EDGGFE
Sbjct: 142 EDGGFE 147

[Close]

BLAST of PI0020576 vs. NCBI nr
Match: XP_008438311.1 (PREDICTED: nucleolin [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIA+DV EVE SHEVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 82  VVEEKQPIAVDVGEVESSHEVRSDSKQSVPPKKEEEVKDEEYGKDERLDLEDNDPESEPE 141

Query: 101 EDGGFE 107
           EDGGFE
Sbjct: 142 EDGGFE 147

[Close]

BLAST of PI0020576 vs. NCBI nr
Match: XP_022146943.1 (nucleolin [Momordica charantia] >XP_022146944.1 nucleolin [Momordica charantia] >XP_022146945.1 nucleolin [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIAIDVEEVEP H+VRS+SK+SVP KKEEEVKD+EYGKDE LDLEDN+PESEPE
Sbjct: 84  VVEEKQPIAIDVEEVEPPHDVRSDSKQSVPPKKEEEVKDDEYGKDERLDLEDNDPESEPE 143

Query: 101 EDGGFE 107
           E GGFE
Sbjct: 144 EYGGFE 149

[Close]

BLAST of PI0020576 vs. NCBI nr
Match: XP_004133977.1 (nucleolin [Cucumis sativus] >KGN56704.1 hypothetical protein Csa_010835 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIA+DV EVE S EVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEP+
Sbjct: 82  VVEEKQPIAVDVGEVESSREVRSDSKQSVPPKKEEEVKDEEYGKDERLDLEDNDPESEPD 141

Query: 101 EDGGFE 107
           EDGGFE
Sbjct: 142 EDGGFE 147

[Close]

BLAST of PI0020576 vs. NCBI nr
Match: XP_023526554.1 (nucleolin-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 41  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPE 100
           VVEEKQPIAIDVEEVEPSHEVR  SK+S P K EEEVKDEEYGKDE LDLEDN+PESEPE
Sbjct: 86  VVEEKQPIAIDVEEVEPSHEVR--SKQSAPPKNEEEVKDEEYGKDERLDLEDNDPESEPE 145

Query: 101 EDGGFE 107
           ED GFE
Sbjct: 146 EDAGFE 149

[Close]

BLAST of PI0020576 vs. TAIR 10
Match: AT2G44710.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.4e-04
Identity = 43/130 (33.08%), Postives = 60/130 (46.15%), Query Frame = 0


Query: 1   MPPRTVKIGAASSKGFPRDAEEAISSGGKGGCGRDGEGLGVVEEKQPIAIDVEEVEP--- 60
           MPP+ VK G A+ +G  R    A+ +          E + + E     A++ +EV P   
Sbjct: 1   MPPKVVKRGGAARRG-GRLTRSALKAQNPHVESSHDESVNIGELSGSDALEAKEVTPEVD 60

Query: 61  -------------------SHEVRSNSKRSVPRKKEEEVKD--EEYGKDESLDLEDNEPE 107
                                E  +N    VP KKE EV++  +++GKDE LDL+DNEPE
Sbjct: 61  KTVEEENPLDVPKSSDSIDDSEAAANPHVDVPSKKETEVEESVDDFGKDERLDLDDNEPE 120

The following BLAST results are available for this feature:

BLAST of PI0020576 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020576 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AW67	6.4e-20	87.88	nucleolin OS=Cucumis melo OX=3656 GN=LOC103483455 PE=4 SV=1	[more]
A0A6J1CZX0	1.9e-19	86.36	nucleolin OS=Momordica charantia OX=3673 GN=LOC111016019 PE=4 SV=1	[more]
A0A0A0L6P0	1.2e-18	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129610 PE=4 SV=1	[more]
A0A6J1IYN4	1.3e-17	84.85	nucleolin-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479663 PE=4 SV=1	[more]
A0A6J1IQT6	1.7e-17	84.85	nucleolin-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479663 PE=4 SV=1	[more]

BLAST of PI0020576 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895622.1	2.0e-20	89.39	heterogeneous nuclear ribonucleoprotein Q isoform X1 [Benincasa hispida]	[more]
XP_008438311.1	1.3e-19	87.88	PREDICTED: nucleolin [Cucumis melo]	[more]
XP_022146943.1	3.8e-19	86.36	nucleolin [Momordica charantia] >XP_022146944.1 nucleolin [Momordica charantia] ...	[more]
XP_004133977.1	2.5e-18	84.85	nucleolin [Cucumis sativus] >KGN56704.1 hypothetical protein Csa_010835 [Cucumis...	[more]
XP_023526554.1	1.2e-17	86.36	nucleolin-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0020576 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44710.1	6.4e-04	33.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020576.1	PI0020576.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding