PI0020562 (gene) Melon (PI 482460) v1

Overview


Name	PI0020562
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr12: 13654211 .. 13654808 (+)
RNA-Seq Expression	PI0020562
Synteny	PI0020562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGCGAACGTTTGCCATTCTGTGCCACTTGCTTAGGACGGTCGCTGGGTTAGCCTCGACTAAAGTCGTAGACGTTAAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCACACAATGTGAAGAATCGAGTGGTCCAGCGGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGTTGTTGACGACCGTCGTACGTCTTCATGACGCGTTGATAAAAAAACCACAACCAGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGGTTCACCTCCTTCGATCTTTACCGTGTATAAATTTTGTAATGGCATGATCTAACAAGGCATTGTTCTTCTGAGGACCAGAACTGTCTTGGTGCACTAGATGGCACGTACATCAAGGTAAACGTAGCGGCCACCAAGCGAGCATCGTATAGAACGCGGAAGGGGGAAGTGATTCTTAAAAATCGTTTCGTAAATATGAATTTAGGTTCTAAGTATGCGACTGAAACAATTGGGCGATCAGGCAAGCATCATGCGTTAAAAAGGGCAGAGCTAAACCTATGCGTTGCAAGTTTACAAATGATATTTCGTTAA

mRNA sequence

ATGGACAGGCGAACGTTTGCCATTCTGTGCCACTTGCTTAGGACGGTCGCTGGGTTAGCCTCGACTAAAGTCGTAGACGTTAAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCACACAATGTGAAGAATCGAGTGGTCCAGCGGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGTTGTTGACGACCGTCGTACGTCTTCATGACGCGTTGATAAAAAAACCACAACCAGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAACTGTCTTGGTGCACTAGATGGCACGTACATCAAGGTAAACGTAGCGGCCACCAAGCGAGCATCGTATAGAACGCGGAAGGGGGAAGTGATTCTTAAAAATCGTTTCGTAAATATGAATTTAGGTTCTAAGTATGCGACTGAAACAATTGGGCGATCAGGCAAGCATCATGCGTTAAAAAGGGCAGAGCTAAACCTATGCGTTGCAAGTTTACAAATGATATTTCGTTAA

Coding sequence (CDS)

ATGGACAGGCGAACGTTTGCCATTCTGTGCCACTTGCTTAGGACGGTCGCTGGGTTAGCCTCGACTAAAGTCGTAGACGTTAAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCACACAATGTGAAGAATCGAGTGGTCCAGCGGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGTTGTTGACGACCGTCGTACGTCTTCATGACGCGTTGATAAAAAAACCACAACCAGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAACTGTCTTGGTGCACTAGATGGCACGTACATCAAGGTAAACGTAGCGGCCACCAAGCGAGCATCGTATAGAACGCGGAAGGGGGAAGTGATTCTTAAAAATCGTTTCGTAAATATGAATTTAGGTTCTAAGTATGCGACTGAAACAATTGGGCGATCAGGCAAGCATCATGCGTTAAAAAGGGCAGAGCTAAACCTATGCGTTGCAAGTTTACAAATGATATTTCGTTAA

Protein sequence

MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYRTRKGEVILKNRFVNMNLGSKYATETIGRSGKHHALKRAELNLCVASLQMIFR

Homology

[Close]

BLAST of PI0020562 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWRCFENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.0e-54
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.0e-54
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. ExPASy TrEMBL
Match: A0A5A7V0W7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00580 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.0e-53
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL STKVVDV+EMVAMFLH+LAH+VKNRV+QREF+RS ETISR
Sbjct: 45  MDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISR 104

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 105 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 164

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 165 TRKGEV 170

[Close]

BLAST of PI0020562 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-54
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWRCFENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 187 TRKGEV 192

[Close]

BLAST of PI0020562 vs. NCBI nr
Match: KAA0061842.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15414.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 8.2e-53
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MDRR FAILCHLLRT+AGL STKVVDV+EMVAMFLH+LAH+VKNRV+QREF+RS ETISR
Sbjct: 45  MDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISR 104

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVNVAATKRASYR 120
           HFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLGALDGTYIKVNV A+ RA YR
Sbjct: 105 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 164

Query: 121 TRKGEV 127
           TRKGEV
Sbjct: 165 TRKGEV 170

[Close]

BLAST of PI0020562 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISR 60
           MD+  F  LC LL+T   L  T  + ++  +A+FL ++ HN++ R VQ  F  SGETISR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNMLLTTVVRLHDALIKKPQPVPNNCT----DPRWRCFENCLGALDGTYIKVNVAATKR 120
           HFN +L  V+ +        QP  N+ T    DP    F++C+G +D  +I V V   ++
Sbjct: 108 HFNNVLNAVIAISKDFF---QPNSNSDTLENDDP---YFKDCVGVVDSFHIPVMVGVDEQ 167

Query: 121 ASYRTRKG 125
             +R   G
Sbjct: 168 GPFRNGNG 169

The following BLAST results are available for this feature:

BLAST of PI0020562 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG29	1.2e-54	82.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	8.0e-54	82.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	8.0e-54	82.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDX0	2.3e-53	81.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V0W7	4.0e-53	81.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065286.1	2.6e-54	82.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046727.1	1.7e-53	82.54	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0034843.1	1.7e-53	82.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	4.8e-53	81.75	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0061842.1	8.2e-53	81.75	retrotransposon protein [Cucumis melo var. makuwa] >TYK15414.1 retrotransposon p...	[more]

BLAST of PI0020562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.6e-14	35.94	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..126
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020562.1	PI0020562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding