PI0020534 (gene) Melon (PI 482460) v1

Overview
NamePI0020534
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDUF4283 domain-containing protein
Locationchr05: 8545883 .. 8546344 (-)
RNA-Seq ExpressionPI0020534
SyntenyPI0020534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGTGGACTAAGTCAGGTATTGCAGTCATTGCTAGTGCTATTGGTAAACCTCTATCTTTAGATTTGGCCACCAAGGAGAGACGTAGACTGTCGTTTGCTAGGGTGTGTGTTGAATTAGAGGGGGGTGTTGATTTGCCTTCTGAGGTCACAGTAAATATGAGGGGTGTGGAATTTATTGTACTAGTTACCTATGAGTGGAAACCCCGTTTGTGTAATTCCTGTCATTCAACTGGTAAATGCCCTCAGAAGGAGACGCCTCAGGTGCAAAAGGAGGCAGATGTGAGCGAGGTAGTTCCTAGTACGGGTAATGAGCAGGCTATTGTTGCTTGTGGGGAGGTGGTGTTAGAATCCTTTAAGCAGTTAGAGGAAGGTGAGCTTCAAGGTTCTTCGATTTGGCAGGTGTCATCGGCCAATAACGTTAGGGGTACGAAGGATGACTACACTCCTGACTCGTAA

mRNA sequence

ATGGAGTTGTGGACTAAGTCAGGTATTGCAGTCATTGCTAGTGCTATTGGTAAACCTCTATCTTTAGATTTGGCCACCAAGGAGAGACGTAGACTGTCGTTTGCTAGGGTGTGTGTTGAATTAGAGGGGGGTGTTGATTTGCCTTCTGAGGTCACAGTAAATATGAGGGGTGTGGAATTTATTGTACTAGTTACCTATGAGTGGAAACCCCGTTTGTGTAATTCCTGTCATTCAACTGGTAAATGCCCTCAGAAGGAGACGCCTCAGGTGCAAAAGGAGGCAGATGTGAGCGAGGTAGTTCCTAGTACGGGTAATGAGCAGGCTATTGTTGCTTGTGGGGAGGTGGTGTTAGAATCCTTTAAGCAGTTAGAGGAAGGTGAGCTTCAAGGTTCTTCGATTTGGCAGGTGTCATCGGCCAATAACGTTAGGGGTACGAAGGATGACTACACTCCTGACTCGTAA

Coding sequence (CDS)

ATGGAGTTGTGGACTAAGTCAGGTATTGCAGTCATTGCTAGTGCTATTGGTAAACCTCTATCTTTAGATTTGGCCACCAAGGAGAGACGTAGACTGTCGTTTGCTAGGGTGTGTGTTGAATTAGAGGGGGGTGTTGATTTGCCTTCTGAGGTCACAGTAAATATGAGGGGTGTGGAATTTATTGTACTAGTTACCTATGAGTGGAAACCCCGTTTGTGTAATTCCTGTCATTCAACTGGTAAATGCCCTCAGAAGGAGACGCCTCAGGTGCAAAAGGAGGCAGATGTGAGCGAGGTAGTTCCTAGTACGGGTAATGAGCAGGCTATTGTTGCTTGTGGGGAGGTGGTGTTAGAATCCTTTAAGCAGTTAGAGGAAGGTGAGCTTCAAGGTTCTTCGATTTGGCAGGTGTCATCGGCCAATAACGTTAGGGGTACGAAGGATGACTACACTCCTGACTCGTAA

Protein sequence

MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEFIVLVTYEWKPRLCNSCHSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVVLESFKQLEEGELQGSSIWQVSSANNVRGTKDDYTPDS
Homology
BLAST of PI0020534 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.8e-39
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+ASA+GKP++LDLATKERRRLS+ARVCV+L+G   +P+E+TV++RGV+F
Sbjct: 202 MELWTEAGLAVVASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDF 261

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
           IV + YEWKP  CN C    HS GKC +    +V +E  VS+V PS G+      CGEVV
Sbjct: 262 IVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLDSEPCGEVV 321

Query: 121 LESFKQLEEGELQGSSIWQVSSANNVRGTKDDYT 151
           LESFKQLEEGE++ S     S      G +DD+T
Sbjct: 322 LESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFT 355

BLAST of PI0020534 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 288 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 347

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 348 NVSVNYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 407

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 408 LEAFKQLEEGE 413

BLAST of PI0020534 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 491 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 550

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 551 NVSVKYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 610

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 611 LEAFKQLEEGE 616

BLAST of PI0020534 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 372 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 431

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 432 NVSVKYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 491

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 492 LEAFKQLEEGE 497

BLAST of PI0020534 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 82/154 (53.25%), Postives = 110/154 (71.43%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+AS +GKPL+LDLATKERRRLS+ARVCVEL+    +P+E+TVN+RGV+F
Sbjct: 68  MELWTEAGLAVVASVVGKPLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNLRGVDF 127

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
           IVLV Y+ KPR CN C    HS+GK P+    +V +E  VS+++P   +E     CG VV
Sbjct: 128 IVLVNYKLKPRKCNLCWAFGHSSGKYPRSVESKVLQEEVVSKIIPGKRDELDSETCGGVV 187

Query: 121 LESFKQLEEGELQGSSIWQVSSANNVRGTKDDYT 151
           LESFKQLE+GE++ S     S        +D++T
Sbjct: 188 LESFKQLEDGEIRSSPNRPSSQVEKEVDKRDEFT 221

BLAST of PI0020534 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 7.9e-39
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+ASA+GKP++LDLATKERRRLS+ARVCV+L+G   +P+E+TV++RGV+F
Sbjct: 202 MELWTEAGLAVVASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDF 261

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
           IV + YEWKP  CN C    HS GKC +    +V +E  VS+V PS G+      CGEVV
Sbjct: 262 IVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLDSEPCGEVV 321

Query: 121 LESFKQLEEGELQGSSIWQVSSANNVRGTKDDYT 151
           LESFKQLEEGE++ S     S      G +DD+T
Sbjct: 322 LESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFT 355

BLAST of PI0020534 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 288 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 347

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 348 NVSVNYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 407

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 408 LEAFKQLEEGE 413

BLAST of PI0020534 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 372 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 431

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 432 NVSVKYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 491

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 492 LEAFKQLEEGE 497

BLAST of PI0020534 vs. NCBI nr
Match: KAA0062320.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+A A+GKP+SLDLATKERRRLS+ARVCVELEGG ++PSE+TVN+RGVEF
Sbjct: 491 MELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEF 550

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
            V V YEWKPR CN C    HS+ KC + E     +   + E V   G++     CGEVV
Sbjct: 551 NVSVKYEWKPRKCNLCGAFGHSSSKCSRSE-----ESKTIQEEVVHKGDDVYSEPCGEVV 610

Query: 121 LESFKQLEEGE 128
           LE+FKQLEEGE
Sbjct: 611 LEAFKQLEEGE 616

BLAST of PI0020534 vs. NCBI nr
Match: KAA0047412.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >TYK14087.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-36
Identity = 82/154 (53.25%), Postives = 110/154 (71.43%), Query Frame = 0

Query: 1   MELWTKSGIAVIASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEF 60
           MELWT++G+AV+AS +GKPL+LDLATKERRRLS+ARVCVEL+    +P+E+TVN+RGV+F
Sbjct: 68  MELWTEAGLAVVASVVGKPLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNLRGVDF 127

Query: 61  IVLVTYEWKPRLCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACGEVV 120
           IVLV Y+ KPR CN C    HS+GK P+    +V +E  VS+++P   +E     CG VV
Sbjct: 128 IVLVNYKLKPRKCNLCWAFGHSSGKYPRSVESKVLQEEVVSKIIPGKRDELDSETCGGVV 187

Query: 121 LESFKQLEEGELQGSSIWQVSSANNVRGTKDDYT 151
           LESFKQLE+GE++ S     S        +D++T
Sbjct: 188 LESFKQLEDGEIRSSPNRPSSQVEKEVDKRDEFT 221

BLAST of PI0020534 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 32/106 (30.19%), Postives = 52/106 (49.06%), Query Frame = 0

Query: 12  IASAIGKPLSLDLATKERRRLSFARVCVELEGGVDLPSEVTVNMRGVEFIVLVTYEWKPR 71
           IA  +G+PL +D+ T    +  FARVC+E+   +  P + TV + G  +   V YE   +
Sbjct: 186 IARGLGRPLKVDMNTINFDKGRFARVCIEV--NLAKPLKGTVLINGDRY--FVAYEGLSK 245

Query: 72  LCNSC----HSTGKCPQKETPQVQKEADVSEVVPSTGNEQAIVACG 114
           +C+SC    H    CP+    +V   A+       T  ++A+V  G
Sbjct: 246 ICSSCGIYGHLVHSCPRNVVVKVSAGAE-------TVTDRAVVPVG 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V0843.8e-3955.84Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc... [more]
A0A5D3DSG91.4e-3661.83DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V5071.8e-3661.83DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A1S3CC831.8e-3661.83uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=... [more]
A0A5A7TVB82.3e-3653.25Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
KAA0060724.17.9e-3955.84hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466... [more]
TYK26656.12.8e-3661.83DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
XP_008460524.13.7e-3661.83PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo][more]
KAA0062320.13.7e-3661.83DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0047412.14.8e-3653.25putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >... [more]
Match NameE-valueIdentityDescription
AT2G01050.16.1e-0530.19zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 2..39
e-value: 2.4E-7
score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0020534.1PI0020534.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane