PI0020517 (gene) Melon (PI 482460) v1

Overview


Name	PI0020517
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein RKD2-like isoform X1
Location	chr07: 23494589 .. 23495710 (-)
RNA-Seq Expression	PI0020517
Synteny	PI0020517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTCAGGGGACGGCGAGTTCCCATTGTGGAAATTTCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTCATGGCCCAAATCAAGCCCGCCGCCGCTGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAATTTACTACCACCCACTTCCACTTCCGGTGAAGCCGCCACCGCCGCTGACGTGGGTTATTGGAATTCTACTGTGGGACCCTCCGGTAGTAATTACCATTTCTTTCTCGGCGAAACTAGTCGTTGGGAATGTCAAGAACAACAAAATTTCAGATTCCGGGTTACTACGGCGGCGACGACGGCGATGTTTACAATATGCAACTTCCGATTACGCCCGAGAGTTATACGTTTCAGCCTATTACTTGTAGTTGCTGCCTAGTTCTTAGAGAAATCGTTCATACCAATGGTTAGTTACTATCATTCTACTCCCTTGTTCACATTCACAGTTTATAATTATGTAACAATTTCTTTTATTATTTTTTAAATGTGTATTTTTTAATTTTATTTTATGGTATGGTCGAAATTGTATGCCAAAACCACAGATGAAGGATTAAGAATAAGTTAGATCGATTAGACTCAGATATTGTATAGTTTAATAAGTTAGCAAGAGTAAAGATGTAATCAAAAGGAAATGAGGTTGTAAAGTGTGAAAACAGTGAAAAATAGGGTTAGATTGAAAAGCGTAAAAACACGACGAGTATTATATTACAATACAAATTCATCCCGTTACGGTTCCCCCAACACCCCCCTAAAAGCGAATTAATCTTGAAATTAAGTTGGAGTATCAATTGCTTTAGTTTTATTACGTGTTCAAACTTTCCCTAGTAATATTATATAATCGAACATTTTGTCTACACGCATATAGACATAAATTAATACGTCTTTCAATTTCTATTCAAATCACTCTTAGGCTAGAGTTGAAATATTTATGTATATATTTGAAGTGGTGTGTTAATATATTATGGTAGGTATCAACACAAGAAAACTAGAGATCCATGGAAGATTCGGAATATTGTGGCATGCAATTCTAGAAGAAAATTTCCCCACCCTCAGTAGCACCAATTCTTCAAGTTTCACTCAATACAAAATGTTCGAGTAA

mRNA sequence

ATGGCAGATTCAGGGGACGGCGAGTTCCCATTGTGGAAATTTCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTCATGGCCCAAATCAAGCCCGCCGCCGCTGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAATTTACTACCACCCACTTCCACTTCCGGTGAAGCCGCCACCGCCGCTGACGTGGGTTATTGGAATTCTACTTCGTTGGGAATGTCAAGAACAACAAAATTTCAGATTCCGGGTTACTACGGCGGCGACGACGGCGATGTTTACAATATGCAACTTCCGATTACGCCCGAGAGTTATACGTTTCAGCCTATTACTTGTAGTTGCTGCCTAGTTCTTAGAGAAATCGTTCATACCAATGGTATCAACACAAGAAAACTAGAGATCCATGGAAGATTCGGAATATTGTGGCATGCAATTCTAGAAGAAAATTTCCCCACCCTCAGTAGCACCAATTCTTCAAGTTTCACTCAATACAAAATGTTCGAGTAA

Coding sequence (CDS)

ATGGCAGATTCAGGGGACGGCGAGTTCCCATTGTGGAAATTTCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTCATGGCCCAAATCAAGCCCGCCGCCGCTGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAATTTACTACCACCCACTTCCACTTCCGGTGAAGCCGCCACCGCCGCTGACGTGGGTTATTGGAATTCTACTTCGTTGGGAATGTCAAGAACAACAAAATTTCAGATTCCGGGTTACTACGGCGGCGACGACGGCGATGTTTACAATATGCAACTTCCGATTACGCCCGAGAGTTATACGTTTCAGCCTATTACTTGTAGTTGCTGCCTAGTTCTTAGAGAAATCGTTCATACCAATGGTATCAACACAAGAAAACTAGAGATCCATGGAAGATTCGGAATATTGTGGCATGCAATTCTAGAAGAAAATTTCCCCACCCTCAGTAGCACCAATTCTTCAAGTTTCACTCAATACAAAATGTTCGAGTAA

Protein sequence

MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTTKFQIPGYYGGDDGDVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

Homology

[Close]

BLAST of PI0020517 vs. ExPASy TrEMBL
Match: A0A5D3D916 (Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001880 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.4e-76
Identity = 148/192 (77.08%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA
Sbjct: 1   MADSGDGEFPLWKFHQNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTSTSGEA 60

Query: 61  ATAADVGYWNSTSLGMSRTT------------------KFQIPGYYGGDDGD----VYNM 120
            +AADV YWNST +G S ++                   FQIPGYY GD GD    VYNM
Sbjct: 61  TSAADVDYWNST-VGPSDSSNYYFFPGETSRWECQEQQNFQIPGYYYGDGGDDDRGVYNM 120

Query: 121 QLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSST 171
           QLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  T
Sbjct: 121 QLPIAPESNTFQPITCSCCLVLREIIHTNGINTRKLEIHGRFGILWHAILEENFPILGGT 180

[Close]

BLAST of PI0020517 vs. ExPASy TrEMBL
Match: A0A5A7VF79 (Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G002430 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.4e-76
Identity = 148/192 (77.08%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA
Sbjct: 1   MADSGDGEFPLWKFHQNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTSTSGEA 60

Query: 61  ATAADVGYWNSTSLGMSRTT------------------KFQIPGYYGGDDGD----VYNM 120
            +AADV YWNST +G S ++                   FQIPGYY GD GD    VYNM
Sbjct: 61  TSAADVDYWNST-VGPSDSSNYYFFPGETSRWECQEQQNFQIPGYYYGDGGDDDRGVYNM 120

Query: 121 QLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSST 171
           QLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  T
Sbjct: 121 QLPIAPESNTFQPITCSCCLVLREIIHTNGINTRKLEIHGRFGILWHAILEENFPILGGT 180

[Close]

BLAST of PI0020517 vs. ExPASy TrEMBL
Match: A0A0A0L065 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646390 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 147/187 (78.61%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFP W+FHRNYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPT TSGEA
Sbjct: 1   MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEA 60

Query: 61  ATAADVGYWNST--SLGMS---------------RTTKFQIPGYYGGDDGDVYNMQLPIT 120
            +AADV YWNST    G S                   FQ PGYYG D G VYNMQLPIT
Sbjct: 61  TSAADVEYWNSTVEPSGSSNYYFFPGETSRWECQEPQNFQTPGYYGHDHGGVYNMQLPIT 120

Query: 121 PESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSF 171
           PES TFQPI CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTL  TNSSSF
Sbjct: 121 PESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSF 180

[Close]

BLAST of PI0020517 vs. ExPASy TrEMBL
Match: A0A5A7V999 (Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00220 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-11
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 94  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFP 153
           DV +  LPI P   T  P  CSCC VLRE +HTNG+N+RKLEIHGR G++ HAILE   P
Sbjct: 108 DVESKLLPIWP--LTPLPFLCSCCQVLREFLHTNGVNSRKLEIHGRLGMISHAILEHK-P 167

Query: 154 TLSSTNSSSFTQYKMFE 171
            ++  N S   QY+MF+
Sbjct: 168 IVNVDNIS--PQYQMFD 179

[Close]

BLAST of PI0020517 vs. ExPASy TrEMBL
Match: A0A1S3BCY1 (uncharacterized protein LOC103488516 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488516 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-11
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 94  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFP 153
           DV +  LPI P   T  P  CSCC VLRE +HTNG+N+RKLEIHGR G++ HAILE   P
Sbjct: 108 DVESKLLPIWP--LTPLPFLCSCCQVLREFLHTNGVNSRKLEIHGRLGMISHAILEHK-P 167

Query: 154 TLSSTNSSSFTQYKMFE 171
            ++  N S   QY+MF+
Sbjct: 168 IVNVDNIS--PQYQMFD 179

[Close]

BLAST of PI0020517 vs. NCBI nr
Match: TYK20065.1 (protein RKD2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 148/192 (77.08%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA
Sbjct: 1   MADSGDGEFPLWKFHQNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTSTSGEA 60

Query: 61  ATAADVGYWNSTSLGMSRTT------------------KFQIPGYYGGDDGD----VYNM 120
            +AADV YWNST +G S ++                   FQIPGYY GD GD    VYNM
Sbjct: 61  TSAADVDYWNST-VGPSDSSNYYFFPGETSRWECQEQQNFQIPGYYYGDGGDDDRGVYNM 120

Query: 121 QLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSST 171
           QLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  T
Sbjct: 121 QLPIAPESNTFQPITCSCCLVLREIIHTNGINTRKLEIHGRFGILWHAILEENFPILGGT 180

[Close]

BLAST of PI0020517 vs. NCBI nr
Match: KAA0064525.1 (protein RKD2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 148/192 (77.08%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA
Sbjct: 1   MADSGDGEFPLWKFHQNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTSTSGEA 60

Query: 61  ATAADVGYWNSTSLGMSRTT------------------KFQIPGYYGGDDGD----VYNM 120
            +AADV YWNST +G S ++                   FQIPGYY GD GD    VYNM
Sbjct: 61  TSAADVDYWNST-VGPSDSSNYYFFPGETSRWECQEQQNFQIPGYYYGDGGDDDRGVYNM 120

Query: 121 QLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSST 171
           QLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  T
Sbjct: 121 QLPIAPESNTFQPITCSCCLVLREIIHTNGINTRKLEIHGRFGILWHAILEENFPILGGT 180

[Close]

BLAST of PI0020517 vs. NCBI nr
Match: KGN55365.1 (hypothetical protein Csa_012027 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 147/187 (78.61%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEA 60
           MADSGDGEFP W+FHRNYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPT TSGEA
Sbjct: 1   MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEA 60

Query: 61  ATAADVGYWNST--SLGMS---------------RTTKFQIPGYYGGDDGDVYNMQLPIT 120
            +AADV YWNST    G S                   FQ PGYYG D G VYNMQLPIT
Sbjct: 61  TSAADVEYWNSTVEPSGSSNYYFFPGETSRWECQEPQNFQTPGYYGHDHGGVYNMQLPIT 120

Query: 121 PESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSF 171
           PES TFQPI CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTL  TNSSSF
Sbjct: 121 PESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSF 180

[Close]

BLAST of PI0020517 vs. NCBI nr
Match: KAG6608345.1 (Protein RKD4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 116/177 (65.54%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGE 60
           MADSGD EFPLW FH+N PLFTDD IL+FMA IKP AAEL+A S A DQ   PP+STSGE
Sbjct: 1   MADSGDSEFPLWNFHQNSPLFTDDNILSFMANIKPTAAELIANSAANDQKFPPPSSTSGE 60

Query: 61  AATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDGDVYNMQLPITPESYTFQPIT 120
               A++ YW+ST L  S        T F  PG YGGD G   + Q  ITPE +TFQPIT
Sbjct: 61  ----AEIEYWSSTVLDPSSYHCFPGETHFPNPG-YGGDGGGYSSTQFSITPEIHTFQPIT 120

Query: 121 CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE 171
           CSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYKMF+
Sbjct: 121 CSCCLILREIVHTNGINTRKLEIHGRFGILWHAILQETFP----TNPSNINQYKMFD 168

[Close]

BLAST of PI0020517 vs. NCBI nr
Match: KAG7037698.1 (Protein RKD3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 6.2e-53
Identity = 115/176 (65.34%), Postives = 128/176 (72.73%), Query Frame = 0


Query: 1   MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGE 60
           MADSGD EFPLW FH+N PLFTDD IL+FMA IKP AAEL+A S A DQ   PP+STSGE
Sbjct: 1   MADSGDSEFPLWNFHQNSPLFTDDNILSFMANIKPTAAELIANSAANDQKFPPPSSTSGE 60

Query: 61  AATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDGDVYNMQLPITPESYTFQPIT 120
               A++ YW+ST L  S        T F  PG YGGD G   + Q  ITPE +TFQPIT
Sbjct: 61  ----AEIEYWSSTVLDPSSYHCFPGETHFPNPG-YGGDGGGYSSTQFSITPEIHTFQPIT 120

Query: 121 CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMF 170
           CSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYK+F
Sbjct: 121 CSCCLILREIVHTNGINTRKLEIHGRFGILWHAILQETFP----TNPSNINQYKIF 167

The following BLAST results are available for this feature:

BLAST of PI0020517 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D916	7.4e-76	77.08	Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VF79	7.4e-76	77.08	Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0L065	1.6e-75	78.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646390 PE=4 SV=1	[more]
A0A5A7V999	3.7e-11	54.55	Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BCY1	3.7e-11	54.55	uncharacterized protein LOC103488516 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of PI0020517 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20065.1	1.5e-75	77.08	protein RKD2-like isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0064525.1	1.5e-75	77.08	protein RKD2-like isoform X1 [Cucumis melo var. makuwa]	[more]
KGN55365.1	3.4e-75	78.61	hypothetical protein Csa_012027 [Cucumis sativus]	[more]
KAG6608345.1	1.6e-53	65.54	Protein RKD4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037698.1	6.2e-53	65.34	Protein RKD3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0020517 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044607	Transcription factor RKD-like	PANTHER	PTHR46373	PROTEIN RKD4	coord: 2..170
None	No IPR available	PANTHER	PTHR46373:SF14	SUBFAMILY NOT NAMED	coord: 2..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020517.1	PI0020517.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity