PI0020491 (gene) Melon (PI 482460) v1

Overview


Name	PI0020491
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Geranylgeranyl transferase type-2 subunit beta-like
Location	chr01: 3049260 .. 3049448 (-)
RNA-Seq Expression	PI0020491
Synteny	PI0020491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTTCTGCCGTGACTTCAGTTTTCTGTTATGTTGGTGCTCTTGCTATAATGGGTTCTCTACACCATATTGACAAGGATCTCCTTGGCCACTGGTCATGTGAGCGGCAAGTCAAATCTGGAGGTCCTAGTGGTCGACCCGAGAAACTTCCTGATATGGGTTTGAACTTCTATTACATATCGTAA

mRNA sequence

ATGTCAAGTTCTGCCGTGACTTCAGTTTTCTGTTATGTTGGTGCTCTTGCTATAATGGGTTCTCTACACCATATTGACAAGGATCTCCTTGGCCACTGGTCATGTGAGCGGCAAGTCAAATCTGGAGGTCCTAGTGGTCGACCCGAGAAACTTCCTGATATGGGTTTGAACTTCTATTACATATCGTAA

Coding sequence (CDS)

ATGTCAAGTTCTGCCGTGACTTCAGTTTTCTGTTATGTTGGTGCTCTTGCTATAATGGGTTCTCTACACCATATTGACAAGGATCTCCTTGGCCACTGGTCATGTGAGCGGCAAGTCAAATCTGGAGGTCCTAGTGGTCGACCCGAGAAACTTCCTGATATGGGTTTGAACTTCTATTACATATCGTAA

Protein sequence

MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

Homology

[Close]

BLAST of PI0020491 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.7e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +
Sbjct: 181 AESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVL 240

Query: 62  S 63
           S
Sbjct: 241 S 241

[Close]

BLAST of PI0020491 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYY 61
           + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ 
Sbjct: 176 AESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWV 235

Query: 62  IS 63
           +S
Sbjct: 236 LS 237

[Close]

BLAST of PI0020491 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ +
Sbjct: 187 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 246

Query: 62  S 63
           +
Sbjct: 247 A 247

[Close]

BLAST of PI0020491 vs. ExPASy Swiss-Prot
Match: P53611 (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ +
Sbjct: 187 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 246

Query: 62  S 63
           +
Sbjct: 247 A 247

[Close]

BLAST of PI0020491 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ +
Sbjct: 195 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 254

Query: 62  S 63
           +
Sbjct: 255 A 255

[Close]

BLAST of PI0020491 vs. ExPASy TrEMBL
Match: A0A5A7SQ05 (Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003910 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG 56
          MS SAV SVFC VG+LAIMGSL HIDKDLLG W CERQ+KSGGP GRPEKLP+ G
Sbjct: 25 MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG 79

[Close]

BLAST of PI0020491 vs. ExPASy TrEMBL
Match: A0A438GJW4 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Vitis vinifera OX=29760 GN=RGTB1_0 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 6  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
          +T+VFC VGALA+ GSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 1  MTAVFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 57

[Close]

BLAST of PI0020491 vs. ExPASy TrEMBL
Match: A0A7C9A538 (Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 180 IFCCVGALAIMGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 233

[Close]

BLAST of PI0020491 vs. ExPASy TrEMBL
Match: A0A7C9A5M7 (Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 153 IFCCVGALAIMGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 206

[Close]

BLAST of PI0020491 vs. ExPASy TrEMBL
Match: A0A7C9A7A9 (Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 180 IFCCVGALAIMGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 233

[Close]

BLAST of PI0020491 vs. NCBI nr
Match: KAA0031621.1 (geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >TYK07073.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG 56
          MS SAV SVFC VG+LAIMGSL HIDKDLLG W CERQ+KSGGP GRPEKLP+ G
Sbjct: 25 MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG 79

[Close]

BLAST of PI0020491 vs. NCBI nr
Match: XP_038887312.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 141 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 194

[Close]

BLAST of PI0020491 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 180 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 233

[Close]

BLAST of PI0020491 vs. NCBI nr
Match: XP_038887310.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida] >XP_038887311.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 9   VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
           +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 154 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 207

[Close]

BLAST of PI0020491 vs. NCBI nr
Match: RVW72500.1 (Geranylgeranyl transferase type-2 subunit beta 1 [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 6  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS 63
          +T+VFC VGALA+ GSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Sbjct: 1  MTAVFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLS 57

[Close]

BLAST of PI0020491 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 80.1 bits (196), Expect = 6.9e-16
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +
Sbjct: 181 AESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVL 240

Query: 62  S 63
           S
Sbjct: 241 S 241

[Close]

BLAST of PI0020491 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 80.1 bits (196), Expect = 6.9e-16
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYI 61
           + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +
Sbjct: 180 AESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVL 239

Query: 62  S 63
           S
Sbjct: 240 S 240

[Close]

BLAST of PI0020491 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-14
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYY 61
           + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ 
Sbjct: 176 AESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWV 235

Query: 62  IS 63
           +S
Sbjct: 236 LS 237

[Close]

BLAST of PI0020491 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-14
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYY 61
           + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ 
Sbjct: 176 AESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWV 235

Query: 62  IS 63
           +S
Sbjct: 236 LS 237

The following BLAST results are available for this feature:

BLAST of PI0020491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J75	9.7e-15	57.38	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LHL5	2.4e-13	56.45	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q5E9B3	2.9e-11	47.54	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
P53611	2.9e-11	47.54	Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGT...	[more]
P53612	2.9e-11	47.54	Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg...	[more]

BLAST of PI0020491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ05	1.4e-16	80.00	Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa ...	[more]
A0A438GJW4	2.7e-15	68.42	Geranylgeranyl transferase type-2 subunit beta 1 OS=Vitis vinifera OX=29760 GN=R...	[more]
A0A7C9A538	2.7e-15	72.22	Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=39360...	[more]
A0A7C9A5M7	2.7e-15	72.22	Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=39360...	[more]
A0A7C9A7A9	2.7e-15	72.22	Geranylgeranyl transferase type-2 subunit beta OS=Opuntia streptacantha OX=39360...	[more]

BLAST of PI0020491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031621.1	2.9e-16	80.00	geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >...	[more]
XP_038887312.1	4.2e-15	74.07	geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hisp...	[more]
XP_038887307.1	4.2e-15	74.07	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_038887310.1	4.2e-15	74.07	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]
RVW72500.1	5.5e-15	68.42	Geranylgeranyl transferase type-2 subunit beta 1 [Vitis vinifera]	[more]

BLAST of PI0020491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12210.1	6.9e-16	57.38	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	6.9e-16	57.38	RAB geranylgeranyl transferase beta subunit 1	[more]
AT3G12070.1	1.7e-14	56.45	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	1.7e-14	56.45	RAB geranylgeranyl transferase beta subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.20		coord: 1..62 e-value: 1.3E-13 score: 52.6
None	No IPR available	PANTHER	PTHR11774:SF13	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 4..61
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 4..61
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 4..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020491.1	PI0020491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005968	Rab-protein geranylgeranyltransferase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004663	Rab geranylgeranyltransferase activity
molecular_function	GO:0008318	protein prenyltransferase activity