PI0020374 (gene) Melon (PI 482460) v1

Overview


Name	PI0020374
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr03: 15079813 .. 15080386 (+)
RNA-Seq Expression	PI0020374
Synteny	PI0020374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGTTCTTCCAATTTAGAATTTCATTTCTTTGAAGATTTAAATAGGGAAGTTCGTAGAATTAGAAGAGAAAGGAGAAAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCCTTAGGAGATTTAGAACTAAGCTTAGGTCCAACCTTTGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGCAATATGTGTGAAATTAGAGAAAAGACCTTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCTCTTGGTATAGTCATACCCCCTACTACTCAACCTTTTGAATTAAAATCAGGACTTATCCATCTTTTGCCCGTCTTTAAAGGAAGTTCCGGAGAGGACCCTGATGGGATAAATGATGGTATGGAAGATGGATTATGGATGGATGTAATGGACTAGAATGATGTATTATGGATTGTGGATTGCAGAGTGGTTATGCAAACTAGAAGTATGCGATGGTGACTAACATGTTCAGGCGATCGTGAATCGTTTATCGTACAAGTTTTCCTCTTGCTCGCCCAAGTATAAGCAGAGCAAGAGGTTTCTTGGGTAA

mRNA sequence

ATGACCCGTTCTTCCAATTTAGAATTTCATTTCTTTGAAGATTTAAATAGGGAAGTTCGTAGAATTAGAAGAGAAAGGAGAAAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCCTTAGGAGATTTAGAACTAAGCTTAGGTCCAACCTTTGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGCAATATGTGTGAAATTAGAGAAAAGACCTTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCTCTTGGTATAGTCATACCCCCTACTACTCAACCTTTTGAATTAAAATCAGGACTTATCCATCTTTTGCCCGTCTTTAAAGGAAGTTCCGGAGAGGACCCTGATGGGATAAATGATGGTATGGAAGATGGATTATGGATGGATGCGATCGTGAATCGTTTATCGTACAAGTTTTCCTCTTGCTCGCCCAAGTATAAGCAGAGCAAGAGGTTTCTTGGGTAA

Coding sequence (CDS)

ATGACCCGTTCTTCCAATTTAGAATTTCATTTCTTTGAAGATTTAAATAGGGAAGTTCGTAGAATTAGAAGAGAAAGGAGAAAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCCTTAGGAGATTTAGAACTAAGCTTAGGTCCAACCTTTGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGCAATATGTGTGAAATTAGAGAAAAGACCTTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCTCTTGGTATAGTCATACCCCCTACTACTCAACCTTTTGAATTAAAATCAGGACTTATCCATCTTTTGCCCGTCTTTAAAGGAAGTTCCGGAGAGGACCCTGATGGGATAAATGATGGTATGGAAGATGGATTATGGATGGATGCGATCGTGAATCGTTTATCGTACAAGTTTTCCTCTTGCTCGCCCAAGTATAAGCAGAGCAAGAGGTTTCTTGGGTAA

Protein sequence

MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPLVPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGEDPDGINDGMEDGLWMDAIVNRLSYKFSSCSPKYKQSKRFLG

Homology

[Close]

BLAST of PI0020374 vs. ExPASy TrEMBL
Match: A0A5A7V3J9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002610 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 94/122 (77.05%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREV RIRRE R+ENS  + SNQEPL  LE S        LD PL
Sbjct: 1   MTRSSNLEFSYFEDLNREVLRIRRESREENSIPSLSNQEPLRGLERS--------LDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
           VPNLGRGNM E+REKT RELV+PDEDQRPL I+IPPTTQPFELKSGLIHLLP+FKGSSGE
Sbjct: 61  VPNLGRGNMGEVREKTLRELVKPDEDQRPLCIIIPPTTQPFELKSGLIHLLPIFKGSSGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. ExPASy TrEMBL
Match: A0A5D3E5X3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002320 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.6e-41
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREVRRIRRER++ENS  N SNQEPL  L        EP LD PL
Sbjct: 1   MTRSSNLEFSYFEDLNREVRRIRRERKEENSIPNLSNQEPLRGL--------EPRLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT RELVE DEDQRPL IVIPPTTQPFELK  LIHLLP+FKGSSGE
Sbjct: 61  DPNLGRGNMGEVREKTLRELVELDEDQRPLCIVIPPTTQPFELKPRLIHLLPIFKGSSGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.8e-40
Identity = 92/122 (75.41%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREVRRIRRERR+ENS  + SNQEPL  L        EP+LD PL
Sbjct: 1   MTRSSNLEFPYFEDLNREVRRIRRERREENSIPSLSNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT REL E DE+QRPL IVIPPTTQPFELK GLIHLLP+FKGS GE
Sbjct: 61  DPNLGRGNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNL+F +FEDLNREVRRIRRERR+ENS +N SNQEPL  L        EP+LD PL
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGN+ E+REKT REL EPDEDQRPL IVIP TTQPFELKSGLIHLL +FKGS GE
Sbjct: 61  DPNLGRGNLGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGE 113

Query: 121 D 122
           D
Sbjct: 121 D 113

[Close]

BLAST of PI0020374 vs. ExPASy TrEMBL
Match: A0A5A7V4B8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00120 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 90/122 (73.77%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FED   EVRRIRRER++EN+  N SNQEPL  L        EP+LD PL
Sbjct: 1   MTRSSNLEFSYFEDW--EVRRIRRERKEENNIPNISNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT RELVEPDED+RPL IVIPPTTQPF+LK GLIHLLP+FKGSSGE
Sbjct: 61  DPNLGRGNMGEVREKTLRELVEPDEDRRPLCIVIPPTTQPFKLKPGLIHLLPIFKGSSGE 112

Query: 121 DP 123
           DP
Sbjct: 121 DP 112

[Close]

BLAST of PI0020374 vs. NCBI nr
Match: KAA0060435.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-41
Identity = 94/122 (77.05%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREV RIRRE R+ENS  + SNQEPL  LE S        LD PL
Sbjct: 1   MTRSSNLEFSYFEDLNREVLRIRRESREENSIPSLSNQEPLRGLERS--------LDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
           VPNLGRGNM E+REKT RELV+PDEDQRPL I+IPPTTQPFELKSGLIHLLP+FKGSSGE
Sbjct: 61  VPNLGRGNMGEVREKTLRELVKPDEDQRPLCIIIPPTTQPFELKSGLIHLLPIFKGSSGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. NCBI nr
Match: KAA0035535.1 (uncharacterized protein E6C27_scaffold285G002020 [Cucumis melo var. makuwa] >TYK31001.1 uncharacterized protein E5676_scaffold455G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-40
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREVRRIRRER++ENS  N SNQEPL  L        EP LD PL
Sbjct: 1   MTRSSNLEFSYFEDLNREVRRIRRERKEENSIPNLSNQEPLRGL--------EPRLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT RELVE DEDQRPL IVIPPTTQPFELK  LIHLLP+FKGSSGE
Sbjct: 61  DPNLGRGNMGEVREKTLRELVELDEDQRPLCIVIPPTTQPFELKPRLIHLLPIFKGSSGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 5.7e-40
Identity = 92/122 (75.41%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNLEF +FEDLNREVRRIRRERR+ENS  + SNQEPL  L        EP+LD PL
Sbjct: 1   MTRSSNLEFPYFEDLNREVRRIRRERREENSIPSLSNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT REL E DE+QRPL IVIPPTTQPFELK GLIHLLP+FKGS GE
Sbjct: 61  DPNLGRGNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

[Close]

BLAST of PI0020374 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MTRSSNL+F +FEDLNREVRRIRRERR+ENS +N SNQEPL  L        EP+LD PL
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGN+ E+REKT REL EPDEDQRPL IVIP TTQPFELKSGLIHLL +FKGS GE
Sbjct: 61  DPNLGRGNLGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGE 113

Query: 121 D 122
           D
Sbjct: 121 D 113

[Close]

BLAST of PI0020374 vs. NCBI nr
Match: KAA0058334.1 (uncharacterized protein E6C27_scaffold409G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 89/122 (72.95%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MTRSSNLEFHFFEDLNREVRRIRRERRKENSNNNFSNQEPLGDLELSLGPTFEPNLDPPL 60
           MT SSNLEF +FEDLNREVR I+RERR+ENS  N SNQEPL  L        EP+LD PL
Sbjct: 1   MTCSSNLEFPYFEDLNREVRIIKRERREENSIPNLSNQEPLRGL--------EPSLDSPL 60

Query: 61  VPNLGRGNMCEIREKTFRELVEPDEDQRPLGIVIPPTTQPFELKSGLIHLLPVFKGSSGE 120
            PNLGRGNM E+REKT REL EP+EDQRPL +VIPPTTQPFELKS LIHLLP+FKG+ GE
Sbjct: 61  DPNLGRGNMSEVREKTLRELAEPNEDQRPLCMVIPPTTQPFELKSRLIHLLPIFKGNFGE 114

Query: 121 DP 123
           DP
Sbjct: 121 DP 114

The following BLAST results are available for this feature:

BLAST of PI0020374 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020374 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3J9	1.1e-41	77.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5D3E5X3	5.6e-41	77.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VQ60	2.8e-40	75.41	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DIP6	1.4e-39	75.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V4B8	1.2e-38	73.77	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0020374 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060435.1	2.3e-41	77.05	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0035535.1	1.2e-40	77.05	uncharacterized protein E6C27_scaffold285G002020 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0067359.1	5.7e-40	75.41	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]
KAA0025369.1	2.8e-39	75.21	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0058334.1	2.4e-38	72.95	uncharacterized protein E6C27_scaffold409G00180 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020374 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020374.1	PI0020374.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity