PI0020213 (gene) Melon (PI 482460) v1

Overview


Name	PI0020213
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr01: 17970569 .. 17971045 (-)
RNA-Seq Expression	PI0020213
Synteny	PI0020213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTTCAGGAGATGTTTGGACAATCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTTCAGGAGATGTTTGGACAATCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTTCAGGAGATGTTTGGACAATCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG

Protein sequence

MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSKVRYPLS

Homology

[Close]

BLAST of PI0020213 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
           RMKEGQSVREHVL M+V FNVAE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAE 143

[Close]

BLAST of PI0020213 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
           RMKEGQSVREHVL M+V FNVAE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAE 143

[Close]

BLAST of PI0020213 vs. ExPASy TrEMBL
Match: A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 114/152 (75.00%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F Q SIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETTGRSLTSK 153
            MKEGQSVREH LDM+V FNVAE  G  +  K
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEK 152

[Close]

BLAST of PI0020213 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 109/143 (76.22%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQ SIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
            MKE QSVREHVLDM+V FN+AE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAE 143

[Close]

BLAST of PI0020213 vs. ExPASy TrEMBL
Match: A0A5D3DIM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00090 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 111/143 (77.62%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVL+EECPP P +NASQ+V+D YD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTKAN+KAR+YILASMS++LSKKH  MVTARQIM SL+EMFGQSSIQI+ EAIKYVYNA
Sbjct: 61  CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
           RMKEGQ VRE VL+M+V FN+A+
Sbjct: 121 RMKEGQYVRELVLNMIVNFNLAQ 143

[Close]

BLAST of PI0020213 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
           RMKEGQSVREHVL M+V FNVAE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAE 143

[Close]

BLAST of PI0020213 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
           RMKEGQSVREHVL M+V FNVAE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAE 143

[Close]

BLAST of PI0020213 vs. NCBI nr
Match: TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 114/152 (75.00%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F Q SIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETTGRSLTSK 153
            MKEGQSVREH LDM+V FNVAE  G  +  K
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEK 152

[Close]

BLAST of PI0020213 vs. NCBI nr
Match: KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 109/143 (76.22%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQ SIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAE 144
            MKE QSVREHVLDM+V FN+AE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAE 143

[Close]

BLAST of PI0020213 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-53
Identity = 104/146 (71.23%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 60
           M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYD
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 61  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQHEAIKYVYNA 120
           RW KANEKAR+YILASMSDVL+KKHES+ TA++I+DSL+E+FGQ S  ++HEAIK++Y  
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETTG 147
           RMKEG SVREHVLDMM+ FN+AE  G
Sbjct: 121 RMKEGTSVREHVLDMMMYFNIAEANG 146

The following BLAST results are available for this feature:

BLAST of PI0020213 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	2.9e-58	81.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	2.9e-58	81.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BM47	1.1e-54	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004...	[more]
A0A5D3DQJ2	1.3e-53	76.22	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A5D3DIM3	1.6e-53	77.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G000...	[more]

BLAST of PI0020213 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	6.0e-58	81.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	6.0e-58	81.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK00843.1	2.4e-54	75.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040193.1	2.6e-53	76.22	gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ...	[more]
XP_038882358.1	3.4e-53	71.23	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]

BLAST of PI0020213 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..150 e-value: 3.0E-10 score: 40.0
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..150
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020213.1	PI0020213.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding