PI0020184 (gene) Melon (PI 482460) v1

Overview


Name	PI0020184
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 16366265 .. 16366468 (-)
RNA-Seq Expression	PI0020184
Synteny	PI0020184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGGGAGGTGACGATATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTTACTGATTGGGAGTTACGTAACCAGTAG

mRNA sequence

ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGGGAGGTGACGATATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTTACTGATTGGGAGTTACGTAACCAGTAG

Coding sequence (CDS)

ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGGGAGGTGACGATATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTTACTGATTGGGAGTTACGTAACCAGTAG

Protein sequence

MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

Homology

[Close]

BLAST of PI0020184 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD+I+YIE SNEWS+WRDQLA TMF+
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  DWELRNQ 68
           DWEL+ Q
Sbjct: 318 DWELQWQ 324

[Close]

BLAST of PI0020184 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 300 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 359

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 360 EWELRNQ 366

[Close]

BLAST of PI0020184 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0020184 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0020184 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0020184 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD+I+YIE SNEWS+WRDQLA TMF+
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  DWELRNQ 68
           DWEL+ Q
Sbjct: 318 DWELQWQ 324

[Close]

BLAST of PI0020184 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0020184 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 256 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 315

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 316 EWELRNQ 322

[Close]

BLAST of PI0020184 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 277 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 336

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 337 EWELRNQ 343

[Close]

BLAST of PI0020184 vs. NCBI nr
Match: KAA0054148.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFT 60
           +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT
Sbjct: 205 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 264

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 265 EWELRNQ 271

The following BLAST results are available for this feature:

BLAST of PI0020184 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG22	2.2e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D9Z3	6.4e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	6.4e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	6.4e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	6.4e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0020184 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062747.1	4.5e-23	80.60	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0065286.1	1.3e-22	80.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	1.3e-22	80.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068124.1	1.3e-22	80.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054148.1	1.3e-22	80.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0020184 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020184.1	PI0020184.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding