PI0020137 (gene) Melon (PI 482460) v1

Overview


Name	PI0020137
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	metallothionein-like protein 1
Location	chr12: 23570341 .. 23571281 (+)
RNA-Seq Expression	PI0020137
Synteny	PI0020137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAATCCAACAATTTAAGCTTTGAAAAAATTAAAATTATTTTTTAGTTTTTGAAAGAGAGAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCTGGGTCTCATCTCTTCTACAATTTTTATATTTACCAATACATTTTTTAATTTTATATTAATAATATTAATTACAAATATACACAATAATTTTTCATAAATTAAATGATTTTTTTATCTATGCAGGACCATTTCAGGAGCCATCATCCTCAAGCAGTAAGTAATAAGTTTTTTTTTAGTGTTTTAGAATTAAGTATATGGTTACATATGAATAAAAAACTCAAACTAATTATTATATAACTCAATTTTTTCATAAGTGAATTATTGATTATAATCCTTTGGAAGATTTCTTTTTAAAACGGCTAATTATGATGTTATTAGAGAATAATGCTAGAATTAATCAAAATGAATAGTGATAGTTTTTCTTGATATACGATTATATATATATATAAAAGTTATATTGAATAAAATAATTATTTTGAAAAATGGTTTGATTGACAATGCAGAAGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCACCTGCAAGTGAGCCATGAGAAAGATGGATAAAACCCCTAAACACAACAAAAGCTTCTTCATGCAATAAATTGATGAATATGATCAATCTACAAACTTTTTTTTCTTTCTTTATCCTTCTTTGTTTGATGAAAATGAAATATTGTAAATTGGCTTTGAAACTCCAAGTTCATATGGATTTGGGTTTTCTATGGCTTCTTGAAATTTAGTGTGAACTGTGTACTATTGCTTTGTTGTGTGTGGGGGAACTTACAGTTGATAATATTCATCAAAAGTTTCAAGTTTGTGTTTGAATTTGTGTTTAATATGAATATTTGGTTTTCTATA

mRNA sequence

CAAAAATCCAACAATTTAAGCTTTGAAAAAATTAAAATTATTTTTTAGTTTTTGAAAGAGAGAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCTGGGACCATTTCAGGAGCCATCATCCTCAAGCAAAGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCACCTGCAAGTGAGCCATGAGAAAGATGGATAAAACCCCTAAACACAACAAAAGCTTCTTCATGCAATAAATTGATGAATATGATCAATCTACAAACTTTTTTTTCTTTCTTTATCCTTCTTTGTTTGATGAAAATGAAATATTGTAAATTGGCTTTGAAACTCCAAGTTCATATGGATTTGGGTTTTCTATGGCTTCTTGAAATTTAGTGTGAACTGTGTACTATTGCTTTGTTGTGTGTGGGGGAACTTACAGTTGATAATATTCATCAAAAGTTTCAAGTTTGTGTTTGAATTTGTGTTTAATATGAATATTTGGTTTTCTATA

Coding sequence (CDS)

ATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCTGGGACCATTTCAGGAGCCATCATCCTCAAGCAAAGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCACCTGCAAGTGA

Protein sequence

MASGCKCGDNCSCGDSCNCQSGTISGAIILKQSGCSCGSSCSCDPCTCK

Homology

[Close]

BLAST of PI0020137 vs. ExPASy Swiss-Prot
Match: P43399 (Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-05
Identity = 27/74 (36.49%), Postives = 32/74 (43.24%), Query Frame = 0


Query: 3  SGCKCGDNCSCGDSCNC---------------------------QSGTISGAIILKQSGC 50
          SGC CG +C+CGDSC C                           Q       +  + SGC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSGC 61

[Close]

BLAST of PI0020137 vs. ExPASy Swiss-Prot
Match: P20238 (Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.5e-05
Identity = 28/72 (38.89%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 1  MASGCKCGDNCSCGDSCNC------QSGT----ISGAIILKQ--------------SGCS 49
          M+SGC CG  C CGD+C+C      ++ T    I G   LK               +GC 
Sbjct: 1  MSSGCSCGSGCKCGDNCSCSMYPDMETNTTVTMIEGVAPLKMYSEGSEKSFGAEGGNGCK 60

[Close]

BLAST of PI0020137 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-05
Identity = 26/74 (35.14%), Postives = 33/74 (44.59%), Query Frame = 0


Query: 3  SGCKCGDNCSCGDSCNCQSGT---------ISGAIIL------------------KQSGC 50
          SGC CG +C+CGDSC C   +             +IL                  K+ GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEGGC 61

[Close]

BLAST of PI0020137 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 6.1e-04
Identity = 25/74 (33.78%), Postives = 33/74 (44.59%), Query Frame = 0


Query: 3  SGCKCGDNCSCGDSCNCQSGT---------ISGAIIL------------------KQSGC 50
          SGC CG +C+CGDSC C   +          +  +IL                  +  GC
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGGC 61

[Close]

BLAST of PI0020137 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1  MASGCKCGDNCSCGDSCNCQSGTISGAIILKQSGCSCGSSCSCDPCTCK 50
          M SGCKCGD+CSCGDSCNCQSG+I+ A IL + GCSCGSSCSCDPC CK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

[Close]

BLAST of PI0020137 vs. ExPASy TrEMBL
Match: O81528 (Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 7  CGDNCSCGDSCNCQSGTISGAIILKQ-SGCSCGSSCSCDPCTC 49
          CGDNCSCGD+C+C SG     +  K+  GC+CG  C+CDPCTC
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

[Close]

BLAST of PI0020137 vs. ExPASy TrEMBL
Match: O81529 (Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 7  CGDNCSCGDSCNCQSG-TISGAIILKQSGCSCGSSCSCDPCTC 49
          CGDNC+CGD+C+C SG   + +   K  GC CG  CSCDPCTC
Sbjct: 3  CGDNCNCGDNCSCGSGCNCNRSYAKKDDGCKCGDDCSCDPCTC 45

[Close]

BLAST of PI0020137 vs. ExPASy TrEMBL
Match: A0A0K9QQ95 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_153520 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-05
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 5  CKCGDNCSCGDSCNCQSGTISGAIILKQSGCSCGSSCSCDPCTC 49
          C CGDNCSCGD CNC        ++  ++ C CG  CSCDPCTC
Sbjct: 6  CGCGDNCSCGDDCNCN-------MMTSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of PI0020137 vs. ExPASy TrEMBL
Match: A0A2D1VNM4 (Metallothionein type 1 OS=Ipomoea nil OX=35883 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.7e-04
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 1  MASGCKCGDNCSCGDSCNCQSGT-----ISGAIILKQS-------------GCSCGSSCS 49
          M+SGCKCG +C CG +C C+  T     I GA  +K S             GC CGS+C+
Sbjct: 1  MSSGCKCGSDCKCGSNCGCEEVTTTVTIIKGAAPVKLSLEGSSEKATEGGHGCKCGSNCT 60

[Close]

BLAST of PI0020137 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1  MASGCKCGDNCSCGDSCNCQSGTISGAIILKQSGCSCGSSCSCDPCTCK 50
          M SGCKCGD+CSCGDSCNCQSG+I+ A IL + GCSCGSSCSCDPC CK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

[Close]

BLAST of PI0020137 vs. NCBI nr
Match: AAC27529.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 7  CGDNCSCGDSCNCQSGTISGAIILKQ-SGCSCGSSCSCDPCTC 49
          CGDNCSCGD+C+C SG     +  K+  GC+CG  C+CDPCTC
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

[Close]

BLAST of PI0020137 vs. NCBI nr
Match: AAC27530.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 7  CGDNCSCGDSCNCQSG-TISGAIILKQSGCSCGSSCSCDPCTC 49
          CGDNC+CGD+C+C SG   + +   K  GC CG  CSCDPCTC
Sbjct: 3  CGDNCNCGDNCSCGSGCNCNRSYAKKDDGCKCGDDCSCDPCTC 45

[Close]

BLAST of PI0020137 vs. NCBI nr
Match: KNA09450.1 (hypothetical protein SOVF_153520 [Spinacia oleracea])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 5  CKCGDNCSCGDSCNCQSGTISGAIILKQSGCSCGSSCSCDPCTC 49
          C CGDNCSCGD CNC        ++  ++ C CG  CSCDPCTC
Sbjct: 6  CGCGDNCSCGDDCNCN-------MMTSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of PI0020137 vs. NCBI nr
Match: XP_022730838.1 (metallothionein-like protein 1 [Durio zibethinus])

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 32/73 (43.84%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 1  MASGCKCGDNCSCGDSCNCQ------------SGT-ISGAIILK------------QSGC 49
          M+SGC CG +C CGDSC+C             +GT ISG   +K            +SGC
Sbjct: 1  MSSGCTCGSDCKCGDSCSCSRNLNLGYTEKTTTGTIISGVATVKMNFEGSEMSLGAESGC 60

The following BLAST results are available for this feature:

BLAST of PI0020137 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43399	1.9e-05	36.49	Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1	[more]
P20238	5.5e-05	38.89	Metallothionein-like protein 1 OS=Erythranthe guttata OX=4155 PE=3 SV=1	[more]
Q41670	9.4e-05	35.14	Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1	[more]
P20830	6.1e-04	33.78	Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1	[more]

BLAST of PI0020137 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KD42	1.4e-14	79.59	metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P...	[more]
O81528	2.6e-05	58.14	Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
O81529	3.4e-05	58.14	Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
A0A0K9QQ95	9.8e-05	54.55	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_153520 PE=4 SV=1	[more]
A0A2D1VNM4	3.7e-04	43.94	Metallothionein type 1 OS=Ipomoea nil OX=35883 PE=3 SV=1	[more]

BLAST of PI0020137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997994.1	2.8e-14	79.59	metallothionein-like protein LSC54 [Cucurbita maxima]	[more]
AAC27529.1	5.3e-05	58.14	metallothionein [Mesembryanthemum crystallinum]	[more]
AAC27530.1	6.9e-05	58.14	metallothionein [Mesembryanthemum crystallinum]	[more]
KNA09450.1	2.0e-04	54.55	hypothetical protein SOVF_153520 [Spinacia oleracea]	[more]
XP_022730838.1	2.6e-04	43.84	metallothionein-like protein 1 [Durio zibethinus]	[more]

BLAST of PI0020137 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020137.1	PI0020137.1	mRNA