PI0020084 (gene) Melon (PI 482460) v1

Overview


Name	PI0020084
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	HMA domain-containing protein
Location	chr06: 27181464 .. 27182311 (+)
RNA-Seq Expression	PI0020084
Synteny	PI0020084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGTTGGTGACACTATCGGTTGAAAAAATAGTCAACTTGAGAAAAGATGACACTACATCTCTCCTCTTTATATCCCCCTTGTTCTCTTCTTCATCAAACTGCTGCAAAACAGAACTTAGAAGAAACCCCCCTTGAACCTTTCCAACAATCTCCACTAATGAACTCAATGGATTACTCTGTTGCAGAAATGGTTTTACACTCCAAAAAACAGACTTCGTTTTCTTTTCTTTCCCCTTCTCCATTTCTATTAAAGCTGAACATTTTTCGCTTATTTGCAGAGTTGTGTTCTTAATGCAAGTGTTCAATGTGAAGCATGCAAAGCAAAAATCCAAGAAATTCTACAAAACATCTATGGTTTCTCTCCTTTACTCTCCTCCTTATCTATTTCTCCTCTTTCCCTCTGATTCTTATTTCTTGTTGTTTTTTTATTAGGTATTTACACAATCACAATGGACTCAGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTAAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAAAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTATGGAGATGATACTAATCATTTTTCATACTCAAATCCTTATCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATCTTACCCCAACCTACAGCGGCCGCAACCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATATGGCCGGGATGGCCGCATCCTGATAATCAATCGTTTGAGGCAAACCAAGATAACAATCAGAGATGTTGTACGGTTATGTAA

mRNA sequence

TTGAAGTTGGTGACACTATCGGTTGAAAAAATAGTCAACTTGAGAAAAGATGACACTACATCTCTCCTCTTTATATCCCCCTTGTTCTCTTCTTCATCAAACTGCTGCAAAACAGAACTTAGAAGAAACCCCCCTTGAACCTTTCCAACAATCTCCACTAATGAACTCAATGGATTACTCTGTTGCAGAAATGGTTTTACACTCCAAAAAACAGACTTCGTTTTCTTTTCTTTCCCCTTCTCCATTTCTATTAAAGCTGAACATTTTTCGCTTATTTGCAGAGTTGTGTTCTTAATGCAAGTGTTCAATGTGAAGCATGCAAAGCAAAAATCCAAGAAATTCTACAAAACATCTATGGTATTTACACAATCACAATGGACTCAGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTAAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAAAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTATGGAGATGATACTAATCATTTTTCATACTCAAATCCTTATCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATCTTACCCCAACCTACAGCGGCCGCAACCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATATGGCCGGGATGGCCGCATCCTGATAATCAATCGTTTGAGGCAAACCAAGATAACAATCAGAGATGTTGTACGGTTATGTAA

Coding sequence (CDS)

ATGGACTCAGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTAAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAAAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTATGGAGATGATACTAATCATTTTTCATACTCAAATCCTTATCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATCTTACCCCAACCTACAGCGGCCGCAACCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATATGGCCGGGATGGCCGCATCCTGATAATCAATCGTTTGAGGCAAACCAAGATAACAATCAGAGATGTTGTACGGTTATGTAA

Protein sequence

MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDDTNHFSYSNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEANQDNNQRCCTVM

Homology

[Close]

BLAST of PI0020084 vs. ExPASy TrEMBL
Match: A0A5A7VH99 (Chitin-binding lectin 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00100 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+G+D TNH SY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPY SYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQ  + 
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQDNNQRCCTVM 132
           NQDNNQRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of PI0020084 vs. ExPASy TrEMBL
Match: A0A1S3BL42 (uncharacterized protein LOC103491020 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491020 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+G+D TNH SY
Sbjct: 70  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 129

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPY SYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQ  + 
Sbjct: 130 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 189

Query: 121 NQDNNQRCCTVM 132
           NQDNNQRCCTVM
Sbjct: 190 NQDNNQRCCTVM 201

[Close]

BLAST of PI0020084 vs. ExPASy TrEMBL
Match: A0A1S3BLR2 (uncharacterized protein LOC103491020 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491020 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+G+D TNH SY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPY SYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQ  + 
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQDNNQRCCTVM 132
           NQDNNQRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of PI0020084 vs. ExPASy TrEMBL
Match: A0A0A0L264 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047760 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.5e-64
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+GDD +NH SY
Sbjct: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPYQSYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPV WPM+WPGWP PDNQ  + 
Sbjct: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 120

Query: 121 NQDNNQRCCTVM 132
           NQ+N QRCCTVM
Sbjct: 121 NQNNFQRCCTVM 132

[Close]

BLAST of PI0020084 vs. ExPASy TrEMBL
Match: A0A6J1EW45 (uncharacterized protein LOC111438728 OS=Cucurbita moschata OX=3662 GN=LOC111438728 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.8e-45
Identity = 99/135 (73.33%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDDTNHFSYS 60
           MDSDDGSVRICGRVNPRTFLKVIE+SGKHAEVKSIRFDGEAGDRRYYP YGDD  H    
Sbjct: 40  MDSDDGSVRICGRVNPRTFLKVIERSGKHAEVKSIRFDGEAGDRRYYP-YGDDPIH---- 99

Query: 61  NPYQSYNEQSHWFDRSYPNLQ--RPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFE 120
           +PYQ+  EQS WFD +YP      PQPYPWQ MLPQPQPQPVPWPMI PG P  +    E
Sbjct: 100 HPYQNSQEQSRWFDTAYPQQPPLPPQPYPWQFMLPQPQPQPVPWPMIGPGGPPGNPAPEE 159

Query: 121 ANQDNN--QRCCTVM 132
            +QDNN  QRCCT+M
Sbjct: 160 PSQDNNNSQRCCTIM 169

[Close]

BLAST of PI0020084 vs. NCBI nr
Match: XP_008449023.1 (PREDICTED: uncharacterized protein LOC103491020 isoform X1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+G+D TNH SY
Sbjct: 70  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 129

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPY SYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQ  + 
Sbjct: 130 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 189

Query: 121 NQDNNQRCCTVM 132
           NQDNNQRCCTVM
Sbjct: 190 NQDNNQRCCTVM 201

[Close]

BLAST of PI0020084 vs. NCBI nr
Match: XP_008449024.1 (PREDICTED: uncharacterized protein LOC103491020 isoform X2 [Cucumis melo] >KAA0065726.1 chitin-binding lectin 1-like [Cucumis melo var. makuwa] >TYK13752.1 chitin-binding lectin 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+G+D TNH SY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPY SYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQ  + 
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQDNNQRCCTVM 132
           NQDNNQRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of PI0020084 vs. NCBI nr
Match: XP_004151526.2 (heavy metal-associated isoprenylated plant protein 34 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+GDD +NH SY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPYQSYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPV WPM+WPGWP PDNQ  + 
Sbjct: 103 SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 162

Query: 121 NQDNNQRCCTVM 132
           NQ+N QRCCTVM
Sbjct: 163 NQNNFQRCCTVM 174

[Close]

BLAST of PI0020084 vs. NCBI nr
Match: KGN56015.1 (hypothetical protein Csa_011155 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEV+SIRFDGEAGDRRYYPS+GDD +NH SY
Sbjct: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQSFEA 120
           SNPYQSYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPV WPM+WPGWP PDNQ  + 
Sbjct: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 120

Query: 121 NQDNNQRCCTVM 132
           NQ+N QRCCTVM
Sbjct: 121 NQNNFQRCCTVM 132

[Close]

BLAST of PI0020084 vs. NCBI nr
Match: XP_038905214.1 (heavy metal-associated isoprenylated plant protein 42 isoform X2 [Benincasa hispida])

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-58
Identity = 114/134 (85.07%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVKSIRFDGEAGDRRYYPSYGDD-TNHFSY 60
           MDS+DGSVRICGRVNPRTFLKVIE SGKHAEVKSIRFDGEAGDRRYYP YGDD +N+ SY
Sbjct: 117 MDSEDGSVRICGRVNPRTFLKVIEMSGKHAEVKSIRFDGEAGDRRYYP-YGDDPSNYLSY 176

Query: 61  SNPYQSYNEQSHWFDRSYPNLQRPQPYPWQLML--PQPQPQPVPWPMIWPGWPHPDNQSF 120
            N YQSY EQ HWFDR+YPNL RPQPYPWQLML  PQPQPQPVP P+IWPGWPHPDNQS 
Sbjct: 177 PNLYQSYPEQCHWFDRTYPNLPRPQPYPWQLMLPQPQPQPQPVPGPVIWPGWPHPDNQSL 236

Query: 121 EANQDNNQRCCTVM 132
           EAN++NNQRCCTVM
Sbjct: 237 EANENNNQRCCTVM 249

The following BLAST results are available for this feature:

BLAST of PI0020084 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VH99	9.7e-68	92.42	Chitin-binding lectin 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BL42	9.7e-68	92.42	uncharacterized protein LOC103491020 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BLR2	9.7e-68	92.42	uncharacterized protein LOC103491020 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L264	6.5e-64	88.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047760 PE=4 SV=1	[more]
A0A6J1EW45	6.8e-45	73.33	uncharacterized protein LOC111438728 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]

BLAST of PI0020084 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449023.1	2.0e-67	92.42	PREDICTED: uncharacterized protein LOC103491020 isoform X1 [Cucumis melo]	[more]
XP_008449024.1	2.0e-67	92.42	PREDICTED: uncharacterized protein LOC103491020 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_004151526.2	1.3e-63	88.64	heavy metal-associated isoprenylated plant protein 34 [Cucumis sativus]	[more]
KGN56015.1	1.3e-63	88.64	hypothetical protein Csa_011155 [Cucumis sativus]	[more]
XP_038905214.1	3.8e-58	85.07	heavy metal-associated isoprenylated plant protein 42 isoform X2 [Benincasa hisp...	[more]

BLAST of PI0020084 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45868:SF53	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 1..98
None	No IPR available	PANTHER	PTHR45868	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020084.1	PI0020084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding