PI0020072 (gene) Melon (PI 482460) v1

Overview


Name	PI0020072
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 3645142 .. 3645582 (-)
RNA-Seq Expression	PI0020072
Synteny	PI0020072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTGTGCGAGGTAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTACCTCTTCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACAGTTTAA

mRNA sequence

ATGAGTATTGTGCGAGGTAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTACCTCTTCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACAGTTTAA

Coding sequence (CDS)

ATGAGTATTGTGCGAGGTAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTACCTCTTCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACAGTTTAA

Protein sequence

MSIVRGRGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

Homology

[Close]

BLAST of PI0020072 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.5e-48
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPS NL+RPS G+ QMRPP S  SN ESSTPPTTYSQAV P+KRF+PRPEIK+YF+K +
Sbjct: 69  PRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDPIIE EYQSLT +ETV
Sbjct: 129 VVYDPIIELEYQSLTSEETV 148

[Close]

BLAST of PI0020072 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.7e-47
Identity = 103/140 (73.57%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTP
Sbjct: 9   RGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPSANL+RP G + QM+PP S  SN +SSTPPTTYSQAV P+KRF+PRP+IK YF+K +
Sbjct: 69  PRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDP IE EYQSLTL+E V
Sbjct: 129 VVYDPTIELEYQSLTLEEAV 148

[Close]

BLAST of PI0020072 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.2e-47
Identity = 104/140 (74.29%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTP
Sbjct: 9   RGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPS NL+RPSGG+ QMRPP S  SN ESSTPPTTYSQAV  +KRF+PRPEIK+YF+K +
Sbjct: 69  PRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDPIIEPEYQSLTL+E V
Sbjct: 129 VVYDPIIEPEYQSLTLEEMV 148

[Close]

BLAST of PI0020072 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.9e-44
Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+R SSS N APSPMS DQYAM LGFTT+T+SK+RSSGIRI SPTES TP
Sbjct: 9   RGRTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIGSPTESLTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRP ANL+RPSG + QMR PTS LSN ESSTPPTTYSQAV P+KRF+PR EIK+YF+K  
Sbjct: 69  PRPLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEIKSYFQKPT 128

Query: 127 AIYDPIIEPEYQS 140
            +YDPIIEP YQ+
Sbjct: 129 VVYDPIIEPGYQT 141

[Close]

BLAST of PI0020072 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 96/127 (75.59%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+R SSS N APSPMSADQY MDLGFTTV RS++RSS IR ESPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRP ANL+RPSG + QMRPP S  SN ESSTPPTTYSQAV P+KRF+PRP+IK+YF+K +
Sbjct: 69  PRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQKPI 128

Query: 127 AIYDPII 134
            +YDPII
Sbjct: 129 VVYDPII 135

[Close]

BLAST of PI0020072 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-47
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPS NL+RPS G+ QMRPP S  SN ESSTPPTTYSQAV P+KRF+PRPEIK+YF+K +
Sbjct: 69  PRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDPIIE EYQSLT +ETV
Sbjct: 129 VVYDPIIELEYQSLTSEETV 148

[Close]

BLAST of PI0020072 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 9.8e-47
Identity = 103/140 (73.57%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTP
Sbjct: 9   RGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPSANL+RP G + QM+PP S  SN +SSTPPTTYSQAV P+KRF+PRP+IK YF+K +
Sbjct: 69  PRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDP IE EYQSLTL+E V
Sbjct: 129 VVYDPTIELEYQSLTLEEAV 148

[Close]

BLAST of PI0020072 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 104/140 (74.29%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTP
Sbjct: 9   RGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRPS NL+RPSGG+ QMRPP S  SN ESSTPPTTYSQAV  +KRF+PRPEIK+YF+K +
Sbjct: 69  PRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSI 128

Query: 127 AIYDPIIEPEYQSLTLDETV 147
            +YDPIIEPEYQSLTL+E V
Sbjct: 129 VVYDPIIEPEYQSLTLEEMV 148

[Close]

BLAST of PI0020072 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 103/138 (74.64%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 9   RVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPR 68
           R +STSS+G+R SSS N APSPMSADQYAMDLGFTTVTRS+ARSS I+I SPT+SSTPPR
Sbjct: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60

Query: 69  PSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAI 128
            SANL+RPS  + QMRP  S LSN ESSTPPTTYSQ + P+KRF+PR EIK+YF+K V +
Sbjct: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120

Query: 129 YDPIIEPEYQSLTLDETV 147
           YD IIEPEYQSLTL+ETV
Sbjct: 121 YDSIIEPEYQSLTLEETV 138

[Close]

BLAST of PI0020072 vs. NCBI nr
Match: KAA0053156.1 (hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 5.9e-44
Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 7   RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTP 66
           RGR +STSSKG+R SSS N APSPMS DQYAM LGFTT+T+SK+RSSGIRI SPTES TP
Sbjct: 9   RGRTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIGSPTESLTP 68

Query: 67  PRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQV 126
           PRP ANL+RPSG + QMR PTS LSN ESSTPPTTYSQAV P+KRF+PR EIK+YF+K  
Sbjct: 69  PRPLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEIKSYFQKPT 128

Query: 127 AIYDPIIEPEYQS 140
            +YDPIIEP YQ+
Sbjct: 129 VVYDPIIEPGYQT 141

The following BLAST results are available for this feature:

BLAST of PI0020072 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TM80	9.5e-48	75.00	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3E4J4	4.7e-47	73.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCE6	6.2e-47	74.29	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UFZ9	2.9e-44	75.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CKX1	1.1e-43	75.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020072 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043136.1	2.0e-47	75.00	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative...	[more]
KAA0026217.1	9.8e-47	73.57	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]
ADN34145.1	1.3e-46	74.29	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAE8646253.1	1.4e-45	74.64	hypothetical protein Csa_023844, partial [Cucumis sativus]	[more]
KAA0053156.1	5.9e-44	75.19	hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020072 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020072.1	PI0020072.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding