PI0019977 (gene) Melon (PI 482460) v1

Overview


Name	PI0019977
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	39S ribosomal protein L47, mitochondrial
Location	chr02: 24130520 .. 24134118 (+)
RNA-Seq Expression	PI0019977
Synteny	PI0019977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCCTAATAAAAAGCTGTCGGCGTATCACCCTCGGGTCTCAAAGTCCCTCGCGCTTCGTAGACTTCCGTCGCCGCTGCTTCCTCGCTCGCCGCGGGAGCGCAGATCGTTGCCGCTTGGCGGAGACAAGCCTTGTCCGAGCTTACCTGCTCCTTCTGTGTTCAGTCTGTCGCTTAGTAGTACGACCGCGACCTATAGAGTTACAGGTGAGTGACCTAGATTTTCGTGTTGTTTTGGGGCTGAAGTAGTTTTTCTTTTTTTGTTCTTCAGCGTCTGTCACTGATGGTTAAGCCTCTGATGCTTTTTGGTTGATGATTAACACCCACTCTAGTTTCTGATGAGTGATTACGGACTTATTTGCTCTTCTCTACTGAGATTAGATACACATTTTCTATTTTATTCGAGATTCATCGTTGCATAACCGTAACTTTAGGACCTTTGTGTCGTTTATTCGAAATGGAACCATCTGTATTTGTATCCTTATTCTTCTTGTTCCATTTCACTCATCTTGTTGGTGATTCTTTTAGTAGAAAAAATGAAGGTCGAATAATTGGTAAAATTATTTTCTCAGAAAGAGCAGGAGAGAATCATTGGAATGTGTGAGAGAACTGGTCCAGTAGGATATGTTGTTTTGTAGCTATTAGTTCTCTCGCTCTCTATGTATCAATCTTAGATGTGGGTCATGATAATTGGTTGCATTGCATGCATGCCTTGTTACTTGTTAAATGAGAGGCGGCTTAAGAGCTAGTGTTGAGACTCTTGTTTTGGTCACTCTATTTCAAATCAATCGATTATAAGGATTTTATTGGAAATCGAATTGAACAAAAACTAAAACAATGTTTGATAACCATTTTGGTTTTTCCAAATCAAACATATAAACATTTCTTTCATGAATTGGTTTCTGTATTTTGTTTTCTAGATTGTAATAGTGTTTTACAAAATCAAAACAAAAATTTCAAAAATTTACATTGGACCACAACTAAGAAATTTTGAGAAAACAAGGACAATTTTCAAAAGCCAAATGGTTATCAACTGTACACACCTACTATTCTTTAATGGTCTAGAATCATAAATTTATGGCTGGCATTTTGTCTTCGGATTATTTACTTTTGTTGTTTTTGAAAAGTATTTAGTCTCACAGTTTTTAGTCTTTCCATTCAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGGTCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTATAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCAAGATGATGACAAACCTGTTGTATATGGTATACTCTTACATTGCCGTGGAACTTTTGGTCTTCTTTAACAACCCATAAATTCGTATATTGGTTCATTCATTTTGTAGAATTTCAAGGTACTGTTCTTCTGGGTATGCAAACTTATACCCCGTGTCTGGTCCGATGTAGTAAAGTTTGAAACTTGAAGTCATGGAGGGTTCCCCAACTCATGAGAATGAATACAAATTGATCAGATACAGCCACTGCACTAAAAGAAAATACCCTCATTGTCATGCATAGAGTCTGAATGCATCTTTTAAGATAACAAAGATTTGAATTGGTTAGAGTACTTAAATTGGTCACTGTGGAATATGGATTCTTCTGCTTTATTGATAAAATATCACAAATGTCATATGTTTTATATTTCTGAATTTCATATGACATAATAGGTGAAATGTGTAATTACCAATACATTAGTATTAGACCTACGAAGTCTTAACTCTTTGGAGACACCAAAGTACTCCAAAAAAATATAGATTTAATTTTATTATACTTTCACTAGTGTGGGTTCTTCCTTCTTTGTTTACTTTGATAACGTGGCTGTTTATAAAGATACCTGAGCGGTTGCAAGGTGAAGATAGGAGCAAGGACATTAAATAGGTGTAGGCAGCCATAATTATGTCTGGTCTATCTTCTATACCTGTCAGTGCTTTCTTATTGCTGAAACTGTGTTATGTGTGCCATGTGATCAGTCCTTTAAAGTTTTATGTGCGCTTTTGGGCTTTTTAGAAATTGTTCTCTTTATCGCTGCACATGCGATACAAATTTTATGTTAATGTTTTTGCATGGTTTCTATTGGTGCGGTGCGATTAATCTTTTTGAACAAATTTGGCTTGCTCGTTGTCAAGAGGCTATTTTGTTTAAGAATTTTAGATGCATATTTTTCTCATGTCAATACAGATTTGATCTTTGCACAAAGTTGCTACTTCTTAGGAATAAAGAAGTCTCTTGAAAAATCCAAAATCAAAGTATGATCTGTGATGCAATAGAAAATTCTATGAGATTTGACATTCTCTCTCTTGGTGGCCACCCACCTATACTATAAAGGATAGGAATATCCTTAAAGTTGTTTGACTCTAACTTTATAGTCTTAGTCTCTTAGACAGTTGTGTGAGACCCAAATACTCATGGATGACCAAAGAATCTTCACAGTTTGGTGGCCACCCCATATGAGATGATATTAGTATCTTAAGAATTTTGCAATATACAACTCTGTAGGAGGATTTCATGGACATACATATTGTTCTAGATGCTTGCAAATACAAAAAGTGCTCATTTAGTTTGTGTTGCCATGATTGAAATTTATAGTATAATAAGCAGCCGTGGACCAAAGGACAAAACTCATCTTTCTTGCAAAATGGAAGGAGAGAAAAGCCGCCCCTTCTTTAGAAGTTAGAAAAATTCTATTGGCTGAAATTTTTCGCTTTGTTCAAAATACATTATTGAGATTCTCATTGTAATTTATATACTGTTAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTTTTGAAGGAGAAGAATATGTTGATGACACAACGTCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCGAAGGTAGAAGTAGACACAGATTTCGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTTTGTTTTGTTGGATCTGTTTCTTTCTCCTTCAGTTGTGTAATCTTAGGCCTGGCAATGGCTCTCCTTTCACTACTTTTCTATTCTAACGTCAATGGTCATTGTTGATACTTATAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCATGTACTTACCGAGAGAGCCATCGATGAACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAATGCTCTGTGATGACTGCAAGTGTTTCAAAATCAGTCTAGTACACTGTAGATCTTATCATCTCAGAGACCAAAGGAGAAAGAGTTAGCGAGATATTGCACGTCTAATGCAAAGTCAGTTCAAATTCATTCTGTAATCGAAGATCTCGTTGGAACCCTAGAAACTGTTTGATGATTTCTAATCTTGTTTTTATCTTTACAATAATCAAAAGTTTCGAAGACTGTTTTTATTTGTGCCAAGATAAAAAAACATTGGCCAAGTTTATTGTTAGAAGATTTGGAATACACGTGTGTATGTGTGTGGAACAAGTTGAAAATGAAAAAGTTGAC

mRNA sequence

AATTTTCCTAATAAAAAGCTGTCGGCGTATCACCCTCGGGTCTCAAAGTCCCTCGCGCTTCGTAGACTTCCGTCGCCGCTGCTTCCTCGCTCGCCGCGGGAGCGCAGATCGTTGCCGCTTGGCGGAGACAAGCCTTGTCCGAGCTTACCTGCTCCTTCTGTGTTCAGTCTGTCGCTTAGTAGTACGACCGCGACCTATAGAGTTACAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGGTCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTATAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCAAGATGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTTTTGAAGGAGAAGAATATGTTGATGACACAACGTCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCGAAGGTGAGGAAGTCAATGTGTCGAATCAAGCATGTACTTACCGAGAGAGCCATCGATGAACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAATGCTCTGTGATGACTGCAAGTGTTTCAAAATCAGTCTAGTACACTGTAGATCTTATCATCTCAGAGACCAAAGGAGAAAGAGTTAGCGAGATATTGCACGTCTAATGCAAAGTCAGTTCAAATTCATTCTGTAATCGAAGATCTCGTTGGAACCCTAGAAACTGTTTGATGATTTCTAATCTTGTTTTTATCTTTACAATAATCAAAAGTTTCGAAGACTGTTTTTATTTGTGCCAAGATAAAAAAACATTGGCCAAGTTTATTGTTAGAAGATTTGGAATACACGTGTGTATGTGTGTGGAACAAGTTGAAAATGAAAAAGTTGAC

Coding sequence (CDS)

ATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGGTCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTATAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCAAGATGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTTTTGAAGGAGAAGAATATGTTGATGACACAACGTCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCGAAGGTGAGGAAGTCAATGTGTCGAATCAAGCATGTACTTACCGAGAGAGCCATCGATGAACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAATGCTCTGTGA

Protein sequence

MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

Homology

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BLAST of PI0019977 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-14
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 37  LEEFFEADRSQDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 96
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLKFPNPERIPKVRKSMCRIKHVLTER 124
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDNVDKVVQER 151

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BLAST of PI0019977 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-14
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 37  LEEFFEADRSQDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 96
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLKFPNPERIPKVRKSMCRIKHVLTER 124
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]

BLAST of PI0019977 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-13
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 37  LEEFFEADRSQDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 96
           LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 64  LEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 123

Query: 97  NLKFPNPERIPKVRKSMCRIKHVLTER 124
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 124 RLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]

BLAST of PI0019977 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 37  LEEFFEADRSQDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLN 96
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 97  AQNLKFPNP---ERIPKVRKSMCRIKHVLTERAIDEPDPRRSAE 136
              L F      ER   VR++M  IKHVLTER     D  + AE
Sbjct: 159 KSGLGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAE 202

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BLAST of PI0019977 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-10
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 35  NPLEEFFEADRS-QDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML 94
           +PL  FF   ++     +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +
Sbjct: 36  HPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEM 95

Query: 95  NAQNLKFP--NPERIPKVRKSMCRIKHVLTER 124
               L  P  + ER+  V K+M  IK VL ER
Sbjct: 96  KRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

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BLAST of PI0019977 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.1e-70
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSSATAAAAA ARTGYNPLEEFFEADRS DD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of PI0019977 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.6e-69
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSSATAAAAA ARTGYNPLEEFFEADRS DD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERI KVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of PI0019977 vs. ExPASy TrEMBL
Match: A0A6J1I0P6 (39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467922 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.9e-66
Identity = 130/143 (90.91%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           M LTR+FGRTFLAAARSETS+ATAAA + ARTGYNPLEEFFEA RS DDDKPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRR AE+KRM+NAL
Sbjct: 121 TERAIDEPDPRRCAELKRMVNAL 143

[Close]

BLAST of PI0019977 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.8e-65
Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSSA AAAA+ A TGYNPLEEFFEADRS DDDKPVVYGRSWK
Sbjct: 1   MFLTRVIGRRFLAAARSETSSA-AAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of PI0019977 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.5e-64
Identity = 132/143 (92.31%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSSA AAAA+  RTGYNPLEEFFEADRS DDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F NPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMINAL 142

[Close]

BLAST of PI0019977 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSSATAAAAA ARTGYNPLEEFFEADRS DD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of PI0019977 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSSATAAAAA ARTGYNPLEEFFEADRS DD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERI KVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of PI0019977 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 4.4e-68
Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSSAT AAAA AR GYNPLEEFFEADRS DDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of PI0019977 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 130/143 (90.91%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           MFLTR+FGRTFLAAARSE S+ATAAA + ARTGYNPLEEFFE  RS +DDKPVVYGRSWK
Sbjct: 1   MFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 143

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BLAST of PI0019977 vs. NCBI nr
Match: XP_022968794.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968810.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968818.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968826.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 259.2 bits (661), Expect = 2.1e-65
Identity = 130/143 (90.91%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAAIARTGYNPLEEFFEADRSQDDDKPVVYGRSWK 60
           M LTR+FGRTFLAAARSETS+ATAAA + ARTGYNPLEEFFEA RS DDDKPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIDEPDPRRSAEMKRMINAL 144
           TERAIDEPDPRR AE+KRM+NAL
Sbjct: 121 TERAIDEPDPRRCAELKRMVNAL 143

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BLAST of PI0019977 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-60
Identity = 117/144 (81.25%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MFLTRVFGRTFLAAARSETSSATAAAAA-IARTGYNPLEEFFEADRSQDDDKPVVYGRSW 60
           MFLTR  GR FLAAA + + S TAAAAA   RT  NPLEEFFE DRSQD+DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHV 120
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPERIPKVR+SMCRIKHV
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 121 LTERAIDEPDPRRSAEMKRMINAL 144
           LTERAI+EPD RRSAEMKRM+N +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:

BLAST of PI0019977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K2Y7	5.0e-14	49.43	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
Q08DT6	8.5e-14	49.43	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
Q9HD33	3.2e-13	48.28	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
Q2H080	3.0e-11	43.27	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]
P87232	4.4e-10	42.39	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]

BLAST of PI0019977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS48	5.1e-70	97.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1	[more]
A0A1S3BWK4	9.6e-69	96.50	39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926...	[more]
A0A6J1I0P6	9.9e-66	90.91	39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JCZ2	3.8e-65	93.01	39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1C2P6	5.5e-64	92.31	39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of PI0019977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138121.1	1.1e-69	97.90	39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti...	[more]
XP_008453113.1	2.0e-68	96.50	PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]	[more]
XP_038879389.1	4.4e-68	95.80	39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S...	[more]
XP_023530690.1	1.6e-65	90.91	39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022968794.1	2.1e-65	90.91	39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1...	[more]

BLAST of PI0019977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07830.1	6.2e-60	81.25	ribosomal protein L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	6.10.330.20		coord: 32..132 e-value: 2.1E-31 score: 110.0
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 63..123 e-value: 3.1E-6 score: 25.1
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 37..123 e-value: 4.7E-36 score: 122.8
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 1..143
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 62..123 e-value: 9.46847E-13 score: 57.1123
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 59..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019977.1	PI0019977.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome