PI0019898 (gene) Melon (PI 482460) v1

Overview


Name	PI0019898
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Location	chr08: 9699233 .. 9699529 (-)
RNA-Seq Expression	PI0019898
Synteny	PI0019898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTACGAAGACTTCATTGAGGATTACTATAAAATTTCAACTTACGCTGCATGTTACGCACCTCAATTTCAACCTGTACTGCATGAAGATTATTGGATCACGCCCACAAGTATGCCTGTCTTACGTCCAGATCCGCGGTTGTTGAGGAAACCAGGTAGACCAAAAAGTTCACGCTATCACAACGAGATGGATTGGGCAGAACCAAGTGCTCAACAACGATGCTCGTTTTGTGGTCAACTTGGTCACAACCGACGAAAGTGTACTTTGTTATTGAGACAGGCACCTGATAGTTAG

mRNA sequence

ATGAACTACGAAGACTTCATTGAGGATTACTATAAAATTTCAACTTACGCTGCATGTTACGCACCTCAATTTCAACCTGTACTGCATGAAGATTATTGGATCACGCCCACAAGTATGCCTGTCTTACGTCCAGATCCGCGGTTGTTGAGGAAACCAGGTAGACCAAAAAGTTCACGCTATCACAACGAGATGGATTGGGCAGAACCAAGTGCTCAACAACGATGCTCGTTTTGTGGTCAACTTGGTCACAACCGACGAAAGTGTACTTTGTTATTGAGACAGGCACCTGATAGTTAG

Coding sequence (CDS)

ATGAACTACGAAGACTTCATTGAGGATTACTATAAAATTTCAACTTACGCTGCATGTTACGCACCTCAATTTCAACCTGTACTGCATGAAGATTATTGGATCACGCCCACAAGTATGCCTGTCTTACGTCCAGATCCGCGGTTGTTGAGGAAACCAGGTAGACCAAAAAGTTCACGCTATCACAACGAGATGGATTGGGCAGAACCAAGTGCTCAACAACGATGCTCGTTTTGTGGTCAACTTGGTCACAACCGACGAAAGTGTACTTTGTTATTGAGACAGGCACCTGATAGTTAG

Protein sequence

MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

Homology

[Close]

BLAST of PI0019898 vs. ExPASy TrEMBL
Match: A0A5D3BJ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4012G00010 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.0e-46
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
          MNYEDF+EDYYKISTYAACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
          HNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of PI0019898 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.1e-45
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKISTYAACYA QFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]

BLAST of PI0019898 vs. ExPASy TrEMBL
Match: A0A5D3D607 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-44
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
          MNYEDF+EDYYKISTY ACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
          HNEMDW E SAQQRCSF  QLGHNRR CTLL RQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of PI0019898 vs. ExPASy TrEMBL
Match: A0A5D3BR89 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00280 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

[Close]

BLAST of PI0019898 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRY
Sbjct: 418 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 477

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Sbjct: 478 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

[Close]

BLAST of PI0019898 vs. NCBI nr
Match: TYJ98405.1 (uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
          MNYEDF+EDYYKISTYAACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 1  MNYEDFVEDYYKISTYAACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
          HNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of PI0019898 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKISTYAACYA QFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 543 MNYEDFVEDYYKISTYAACYASQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 602

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Sbjct: 603 HNEMDWTEQSAQQRCSFCSQLGHNRRSCTLLRRQAPDS 640

[Close]

BLAST of PI0019898 vs. NCBI nr
Match: TYK18933.1 (uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 5.2e-44
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
          MNYEDF+EDYYKISTY ACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRY
Sbjct: 1  MNYEDFVEDYYKISTYVACYAPQFQPVPHEDYWITPTSMPVLLPDPSLLRKSGRPKTSRY 60

Query: 61 HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
          HNEMDW E SAQQRCSF  QLGHNRR CTLL RQAPDS
Sbjct: 61 HNEMDWTEQSAQQRCSFSSQLGHNRRSCTLLRRQAPDS 98

[Close]

BLAST of PI0019898 vs. NCBI nr
Match: KAA0039601.1 (uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRY
Sbjct: 418 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 477

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Sbjct: 478 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 515

[Close]

BLAST of PI0019898 vs. NCBI nr
Match: TYK01705.1 (uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRY 60
           MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRY
Sbjct: 330 MNYEDFVEDYYKILTYVACYAPQFQPVPHEDYWITPTSMPVLLSDPSLLRKSGRSKSSRY 389

Query: 61  HNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS 99
           HNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Sbjct: 390 HNEMDWTEQSAQQRCSFCSQLGHNRWRCTLLRRQAPDS 427

The following BLAST results are available for this feature:

BLAST of PI0019898 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ66	6.0e-46	88.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T1X8	5.1e-45	87.76	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3D607	2.5e-44	86.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BR89	1.4e-42	84.69	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TD93	1.4e-42	84.69	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of PI0019898 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98405.1	1.2e-45	88.78	uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa]	[more]
KAA0036768.1	1.0e-44	87.76	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
TYK18933.1	5.2e-44	86.73	uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa]	[more]
KAA0039601.1	2.9e-42	84.69	uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]	[more]
TYK01705.1	2.9e-42	84.69	uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa]	[more]

BLAST of PI0019898 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 74..88 score: 8.515406
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 65..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019898.1	PI0019898.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding