Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG
mRNA sequence
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG
Coding sequence (CDS)
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG
Protein sequence
MSDSEQPFELDPEIERTFRGNWRRARQRQIRRMENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPPHENARRRKELMSFQ
Homology
BLAST of PI0019808 vs. ExPASy TrEMBL
Match:
A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)
HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 0
Query: 34 ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFM 93
+NN+ P QA N Y+A D DRPIRSYA+PNLY+FNP IAYP F +N RFEIK M
Sbjct: 4 QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63
Query: 94 LQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 143
LQ+IQNAGQF RH +DPH++IR+FYSICASFHMPGIS EELRF F L
Sbjct: 64 LQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112
BLAST of PI0019808 vs. ExPASy TrEMBL
Match:
U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 67/143 (46.85%), Postives = 83/143 (58.04%), Query Frame = 0
Query: 49 NAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSG 108
N +A D R IR YA P NP I P + +FE+KP M QM+Q GQF
Sbjct: 11 NPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQFSGMPT 70
Query: 109 EDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIE 168
EDPH H+RSF + SF + G+S E LR LFP +LRD A W N L V W+ L E
Sbjct: 71 EDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAE 130
Query: 169 KFMKKFFPPHENARRRKELMSFQ 192
KF++K+FPP NA+ R E+MSFQ
Sbjct: 131 KFLRKYFPPTRNAKFRSEIMSFQ 152
BLAST of PI0019808 vs. ExPASy TrEMBL
Match:
A0A392NID4 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0020009 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 8.4e-28
Identity = 78/200 (39.00%), Postives = 106/200 (53.00%), Query Frame = 0
Query: 8 FELDPEIERTFRGNWRRARQRQ---IRRMENNRNAPPPQAD--------PEPNAAYIAHD 67
+ DPEIERTFR R R+ + E ++ AD EP+ IA+D
Sbjct: 9 YRADPEIERTFRILRRNQRENTGVGVNLAEEGYSSEETMADQVEPEVVMAEPDIIGIAND 68
Query: 68 LDRPIRSYAT--PNLYN---FNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDP 127
R IR YA PN N PEI A+FE KP M QM+Q GQF R + EDP
Sbjct: 69 RGRSIRDYAAFDPNAMNTGIVKPEIT------AAQFEFKPMMFQMLQTVGQFSRAATEDP 128
Query: 128 HEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFM 187
H H++ F + ++F +PGI+ + R LFP +LRD W N LE + W+ L EKF+
Sbjct: 129 HLHLKQFLKVASNFKIPGITIDAFRLRLFPYSLRDRPKSWLNSLEPNAIANWNALAEKFL 188
Query: 188 KKFFPPHENARRRKELMSFQ 192
K+FPP +NA+ R ++ SF+
Sbjct: 189 AKYFPPVKNAKMRNDITSFR 202
BLAST of PI0019808 vs. ExPASy TrEMBL
Match:
A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0
Query: 35 NNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFML 94
NN+N P Q E N AY+AHDLD+PI+SYA+PNLY+FNP IAY FG+N FEIK ML
Sbjct: 2 NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61
Query: 95 QMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGIS 132
M QNAGQFG H EDP++HIR+FY ICASF+M IS
Sbjct: 62 YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98
BLAST of PI0019808 vs. ExPASy TrEMBL
Match:
A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 0
Query: 48 PNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHS 107
PN ++A DR +R YA L + N + F +A+FE KP MLQM+ N GQFG
Sbjct: 7 PNPIHVADQRDRAMRDYAAXILEDLNSSVINS-FPADAKFEFKPMMLQMLNNIGQFGGLE 66
Query: 108 GEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLI 167
EDP H++SF + +F +PGIS + LR LFP ++ +A W N + TW ++
Sbjct: 67 HEDPRSHLKSFIKVANTFRLPGISDDALRLTLFPFSVSGQATAWLNAFPSDTITTWSDMV 126
Query: 168 EKFMKKFFPPHENARRRKELMSFQ 192
+KF+ K+FPP NA R+E++SF+
Sbjct: 127 DKFLVKYFPPTRNADVREEIISFR 149
BLAST of PI0019808 vs. NCBI nr
Match:
WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 99/210 (47.14%), Postives = 139/210 (66.19%), Query Frame = 0
Query: 1 MSDSEQP-FELDPEIERTFRGNWRRARQRQIRR-MENNRNA-----PPPQADPEPNA--- 60
MS+ + P F++DPEIERTFR R+ +QR+ + +E N +A PQA NA
Sbjct: 2 MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61
Query: 61 ---------AYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAG 120
+AHD +RP+R YA+PNLYNF P I P F N RFE+KP MLQM+Q AG
Sbjct: 62 EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121
Query: 121 QFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVG 180
QFG +GEDPH H++SF IC++F M G+ + +R LFP +LRDEA +WA E GE+
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEIT 181
Query: 181 TWDQLIEKFMKKFFPPHENARRRKELMSFQ 192
TW +++EKFM+K+FPP +A+RR+++++F+
Sbjct: 182 TWGKMVEKFMQKYFPPTVSAKRRRDIVTFE 211
BLAST of PI0019808 vs. NCBI nr
Match:
XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])
HSP 1 Score: 179.5 bits (454), Expect = 2.8e-41
Identity = 93/194 (47.94%), Postives = 128/194 (65.98%), Query Frame = 0
Query: 4 SEQPFELDPEIERTF--RGNWRRARQRQIRRMENNRNAPPPQAD----PEPNAAYIAHDL 63
++ FE +PEI+ TF R + RA +R+I +NN N P P + ++A D
Sbjct: 5 TDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFLAADH 64
Query: 64 DRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRS 123
+ PIR+YA PNLY+F+P I+ PI +NARFEIKP M+QMIQN QF E+PH H+
Sbjct: 65 NIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHAHLTI 124
Query: 124 FYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPP 183
F +C++F +PGI+P +R LFP TLRD+A RWA+ LE E+ + DQL+E FMKKFFPP
Sbjct: 125 FVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEITSSDQLVEWFMKKFFPP 184
Query: 184 HENARRRKELMSFQ 192
N RRRK +++F+
Sbjct: 185 AINTRRRKNVLNFE 198
BLAST of PI0019808 vs. NCBI nr
Match:
XP_038880527.1 (uncharacterized protein LOC120072192 [Benincasa hispida])
HSP 1 Score: 158.7 bits (400), Expect = 5.0e-35
Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 0
Query: 53 IAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPH 112
+A++ RP+R YA+P LY+F+P I YP+ RFE+K MLQM+Q A QFG GEDPH
Sbjct: 1 MANNSTRPMREYASPVLYDFSPGIIYPM-PDGTRFEMKSVMLQMLQTARQFGGSHGEDPH 60
Query: 113 EHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMK 172
H++ F C F +P I+PE++R +LFP +LRD+A +W + LE E+ TW++L+EKFM+
Sbjct: 61 AHMKRFLETCNFFVIPRITPEKIRLSLFPNSLRDDAKQWVSSLEPEEITTWEKLVEKFMQ 120
Query: 173 KFFPPHENARRRKELMSFQ 192
K+FPP NARRR+E+M+F+
Sbjct: 121 KYFPPTTNARRRREIMNFE 138
BLAST of PI0019808 vs. NCBI nr
Match:
XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])
HSP 1 Score: 152.5 bits (384), Expect = 3.6e-33
Identity = 87/194 (44.85%), Postives = 106/194 (54.64%), Query Frame = 0
Query: 1 MSDSEQPFEL---DPEIERTFRGNWRRARQRQIRRMENNRNAPPPQADPEPNAAYIAHDL 60
M++ E+ EL DPEIERTFR RR Q+ +R E N +A D
Sbjct: 1 MNEQEEDLELAPIDPEIERTFR--QRRKEQKAKKRCNMADGFEVGGVHNEANPIALADDR 60
Query: 61 DRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRS 120
R IR YA P NP I P + FE+KP M QM+Q GQFG EDPH HIRS
Sbjct: 61 ARAIREYAAPMFNELNPGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRS 120
Query: 121 FYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPP 180
F + SF + G+S E LR LFP +LRD A W N L V W+ L EKF++K+FPP
Sbjct: 121 FLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFLRKYFPP 180
Query: 181 HENARRRKELMSFQ 192
NA+ R E+MSFQ
Sbjct: 181 TRNAKFRSEIMSFQ 191
BLAST of PI0019808 vs. NCBI nr
Match:
KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])
HSP 1 Score: 152.1 bits (383), Expect = 4.7e-33
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 0
Query: 34 ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFM 93
+NN+ P QA N Y+A D DRPIRSYA+PNLY+FNP IAYP F +N RFEIK M
Sbjct: 4 QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63
Query: 94 LQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 143
LQ+IQNAGQF RH +DPH++IR+FYSICASFHMPGIS EELRF F L
Sbjct: 64 LQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V2U7 | 2.3e-33 | 66.97 | Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... | [more] |
U5CUI2 | 1.3e-28 | 46.85 | Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... | [more] |
A0A392NID4 | 8.4e-28 | 39.00 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028... | [more] |
A0A5A7UDN8 | 4.2e-27 | 64.95 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1DY39 | 2.1e-26 | 40.28 | uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
Match Name | E-value | Identity | Description | |
WP_217833177.1 | 2.2e-46 | 47.14 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
XP_038887458.1 | 2.8e-41 | 47.94 | uncharacterized protein LOC120077591 [Benincasa hispida] | [more] |
XP_038880527.1 | 5.0e-35 | 51.08 | uncharacterized protein LOC120072192 [Benincasa hispida] | [more] |
XP_030508936.1 | 3.6e-33 | 44.85 | uncharacterized protein LOC115723589 [Cannabis sativa] | [more] |
KAA0062403.1 | 4.7e-33 | 66.97 | putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... | [more] |
Match Name | E-value | Identity | Description | |