PI0019808 (gene) Melon (PI 482460) v1

Overview
NamePI0019808
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr11: 13374979 .. 13375554 (+)
RNA-Seq ExpressionPI0019808
SyntenyPI0019808
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG

mRNA sequence

ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG

Coding sequence (CDS)

ATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATTGGCGAAGAGCAAGGCAAAGACAAATTCGTAGAATGGAAAATAACAGAAATGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGACTTGGACAGACCAATTAGATCTTATGCGACACCCAACCTTTATAACTTCAATCCAGAAATCGCCTACCCTATATTTGGCAAAAACGCCAGGTTTGAAATCAAACCTTTTATGCTTCAGATGATTCAAAACGCCGGACAATTTGGCAGACATTCTGGGGAAGATCCACACGAGCATATAAGGAGTTTCTACTCCATCTGCGCTTCTTTTCACATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAATAGGTGGGCAAATGTCCTGGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTCTTCCCACCTCATGAAAATGCAAGAAGAAGGAAGGAGCTTATGAGCTTCCAGTAG

Protein sequence

MSDSEQPFELDPEIERTFRGNWRRARQRQIRRMENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPPHENARRRKELMSFQ
Homology
BLAST of PI0019808 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 34  ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFM 93
           +NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+FNP IAYP F +N RFEIK  M
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 94  LQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 143
           LQ+IQNAGQF RH  +DPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 64  LQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0019808 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 67/143 (46.85%), Postives = 83/143 (58.04%), Query Frame = 0

Query: 49  NAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSG 108
           N   +A D  R IR YA P     NP I  P   +  +FE+KP M QM+Q  GQF     
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQFSGMPT 70

Query: 109 EDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIE 168
           EDPH H+RSF  +  SF + G+S E LR  LFP +LRD A  W N L    V  W+ L E
Sbjct: 71  EDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAE 130

Query: 169 KFMKKFFPPHENARRRKELMSFQ 192
           KF++K+FPP  NA+ R E+MSFQ
Sbjct: 131 KFLRKYFPPTRNAKFRSEIMSFQ 152

BLAST of PI0019808 vs. ExPASy TrEMBL
Match: A0A392NID4 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0020009 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.4e-28
Identity = 78/200 (39.00%), Postives = 106/200 (53.00%), Query Frame = 0

Query: 8   FELDPEIERTFRGNWRRARQRQ---IRRMENNRNAPPPQAD--------PEPNAAYIAHD 67
           +  DPEIERTFR   R  R+     +   E   ++    AD         EP+   IA+D
Sbjct: 9   YRADPEIERTFRILRRNQRENTGVGVNLAEEGYSSEETMADQVEPEVVMAEPDIIGIAND 68

Query: 68  LDRPIRSYAT--PNLYN---FNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDP 127
             R IR YA   PN  N     PEI        A+FE KP M QM+Q  GQF R + EDP
Sbjct: 69  RGRSIRDYAAFDPNAMNTGIVKPEIT------AAQFEFKPMMFQMLQTVGQFSRAATEDP 128

Query: 128 HEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFM 187
           H H++ F  + ++F +PGI+ +  R  LFP +LRD    W N LE   +  W+ L EKF+
Sbjct: 129 HLHLKQFLKVASNFKIPGITIDAFRLRLFPYSLRDRPKSWLNSLEPNAIANWNALAEKFL 188

Query: 188 KKFFPPHENARRRKELMSFQ 192
            K+FPP +NA+ R ++ SF+
Sbjct: 189 AKYFPPVKNAKMRNDITSFR 202

BLAST of PI0019808 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 35  NNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFML 94
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+FNP IAY  FG+N  FEIK  ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 95  QMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGIS 132
            M QNAGQFG H  EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0019808 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 0

Query: 48  PNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHS 107
           PN  ++A   DR +R YA   L + N  +    F  +A+FE KP MLQM+ N GQFG   
Sbjct: 7   PNPIHVADQRDRAMRDYAAXILEDLNSSVINS-FPADAKFEFKPMMLQMLNNIGQFGGLE 66

Query: 108 GEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLI 167
            EDP  H++SF  +  +F +PGIS + LR  LFP ++  +A  W N      + TW  ++
Sbjct: 67  HEDPRSHLKSFIKVANTFRLPGISDDALRLTLFPFSVSGQATAWLNAFPSDTITTWSDMV 126

Query: 168 EKFMKKFFPPHENARRRKELMSFQ 192
           +KF+ K+FPP  NA  R+E++SF+
Sbjct: 127 DKFLVKYFPPTRNADVREEIISFR 149

BLAST of PI0019808 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 99/210 (47.14%), Postives = 139/210 (66.19%), Query Frame = 0

Query: 1   MSDSEQP-FELDPEIERTFRGNWRRARQRQIRR-MENNRNA-----PPPQADPEPNA--- 60
           MS+ + P F++DPEIERTFR   R+ +QR+  + +E N +A       PQA    NA   
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  ---------AYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAG 120
                      +AHD +RP+R YA+PNLYNF P I  P F  N RFE+KP MLQM+Q AG
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

Query: 121 QFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVG 180
           QFG  +GEDPH H++SF  IC++F M G+  + +R  LFP +LRDEA +WA   E GE+ 
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEIT 181

Query: 181 TWDQLIEKFMKKFFPPHENARRRKELMSFQ 192
           TW +++EKFM+K+FPP  +A+RR+++++F+
Sbjct: 182 TWGKMVEKFMQKYFPPTVSAKRRRDIVTFE 211

BLAST of PI0019808 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-41
Identity = 93/194 (47.94%), Postives = 128/194 (65.98%), Query Frame = 0

Query: 4   SEQPFELDPEIERTF--RGNWRRARQRQIRRMENNRNAPPPQAD----PEPNAAYIAHDL 63
           ++  FE +PEI+ TF  R +  RA +R+I   +NN N  P        P  +  ++A D 
Sbjct: 5   TDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFLAADH 64

Query: 64  DRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRS 123
           + PIR+YA PNLY+F+P I+ PI  +NARFEIKP M+QMIQN  QF     E+PH H+  
Sbjct: 65  NIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHAHLTI 124

Query: 124 FYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPP 183
           F  +C++F +PGI+P  +R  LFP TLRD+A RWA+ LE  E+ + DQL+E FMKKFFPP
Sbjct: 125 FVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEITSSDQLVEWFMKKFFPP 184

Query: 184 HENARRRKELMSFQ 192
             N RRRK +++F+
Sbjct: 185 AINTRRRKNVLNFE 198

BLAST of PI0019808 vs. NCBI nr
Match: XP_038880527.1 (uncharacterized protein LOC120072192 [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-35
Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 0

Query: 53  IAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPH 112
           +A++  RP+R YA+P LY+F+P I YP+     RFE+K  MLQM+Q A QFG   GEDPH
Sbjct: 1   MANNSTRPMREYASPVLYDFSPGIIYPM-PDGTRFEMKSVMLQMLQTARQFGGSHGEDPH 60

Query: 113 EHIRSFYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMK 172
            H++ F   C  F +P I+PE++R +LFP +LRD+A +W + LE  E+ TW++L+EKFM+
Sbjct: 61  AHMKRFLETCNFFVIPRITPEKIRLSLFPNSLRDDAKQWVSSLEPEEITTWEKLVEKFMQ 120

Query: 173 KFFPPHENARRRKELMSFQ 192
           K+FPP  NARRR+E+M+F+
Sbjct: 121 KYFPPTTNARRRREIMNFE 138

BLAST of PI0019808 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-33
Identity = 87/194 (44.85%), Postives = 106/194 (54.64%), Query Frame = 0

Query: 1   MSDSEQPFEL---DPEIERTFRGNWRRARQRQIRRMENNRNAPPPQADPEPNAAYIAHDL 60
           M++ E+  EL   DPEIERTFR   RR  Q+  +R              E N   +A D 
Sbjct: 1   MNEQEEDLELAPIDPEIERTFR--QRRKEQKAKKRCNMADGFEVGGVHNEANPIALADDR 60

Query: 61  DRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFMLQMIQNAGQFGRHSGEDPHEHIRS 120
            R IR YA P     NP I  P   +   FE+KP M QM+Q  GQFG    EDPH HIRS
Sbjct: 61  ARAIREYAAPMFNELNPGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRS 120

Query: 121 FYSICASFHMPGISPEELRFALFPLTLRDEANRWANVLEDGEVGTWDQLIEKFMKKFFPP 180
           F  +  SF + G+S E LR  LFP +LRD A  W N L    V  W+ L EKF++K+FPP
Sbjct: 121 FLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFLRKYFPP 180

Query: 181 HENARRRKELMSFQ 192
             NA+ R E+MSFQ
Sbjct: 181 TRNAKFRSEIMSFQ 191

BLAST of PI0019808 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-33
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 34  ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYATPNLYNFNPEIAYPIFGKNARFEIKPFM 93
           +NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+FNP IAYP F +N RFEIK  M
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 94  LQMIQNAGQFGRHSGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 143
           LQ+IQNAGQF RH  +DPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 64  LQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U72.3e-3366.97Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
U5CUI21.3e-2846.85Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A392NID48.4e-2839.00Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028... [more]
A0A5A7UDN84.2e-2764.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DY392.1e-2640.28uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
WP_217833177.12.2e-4647.14retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038887458.12.8e-4147.94uncharacterized protein LOC120077591 [Benincasa hispida][more]
XP_038880527.15.0e-3551.08uncharacterized protein LOC120072192 [Benincasa hispida][more]
XP_030508936.13.6e-3344.85uncharacterized protein LOC115723589 [Cannabis sativa][more]
KAA0062403.14.7e-3366.97putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 139..191
e-value: 1.1E-6
score: 28.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0019808.1PI0019808.1mRNA