PI0019782 (gene) Melon (PI 482460) v1

Overview


Name	PI0019782
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 19024347 .. 19024511 (+)
RNA-Seq Expression	PI0019782
Synteny	PI0019782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGACATACCAGATGATGTAGATGAGGGTGACTCTACATACGCGACCACTACCGATGAAGATATTCATTACATAGAGACCTCGAATGAATGGAATCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCATAATCAGTAA

mRNA sequence

ATGACGAACAATGACATACCAGATGATGTAGATGAGGGTGACTCTACATACGCGACCACTACCGATGAAGATATTCATTACATAGAGACCTCGAATGAATGGAATCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCATAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGACATACCAGATGATGTAGATGAGGGTGACTCTACATACGCGACCACTACCGATGAAGATATTCATTACATAGAGACCTCGAATGAATGGAATCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCATAATCAGTAA

Protein sequence

MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ

Homology

[Close]

BLAST of PI0019782 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI D++DE DST+ATTT +DIHYIETSNEW+QWRD+LAE MFSDWEL NQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0019782 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI D++DE DST+ATTT +DIHYIETSNEW+QWRD+LAE MFSDWEL NQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0019782 vs. ExPASy TrEMBL
Match: A0A5A7UFY9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001210 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE DST+ATT  +DI+YIET+NEW QW+DELAE MFSDWELHNQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

[Close]

BLAST of PI0019782 vs. ExPASy TrEMBL
Match: A0A5D3BPW4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00460 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE  ST+ TT D+DIHYIETSNEW+QWRD+L E MFS+WELHNQ
Sbjct: 207 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 260

[Close]

BLAST of PI0019782 vs. ExPASy TrEMBL
Match: A0A5A7UCP5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00640 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE  ST+ TT D+DIHYIETSNEW+QWRD+L E MFS+WELHNQ
Sbjct: 204 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 257

[Close]

BLAST of PI0019782 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI D++DE DST+ATTT +DIHYIETSNEW+QWRD+LAE MFSDWEL NQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0019782 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI D++DE DST+ATTT +DIHYIETSNEW+QWRD+LAE MFSDWEL NQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0019782 vs. NCBI nr
Match: KAA0053146.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE DST+ATT  +DI+YIET+NEW QW+DELAE MFSDWELHNQ
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHNQ 209

[Close]

BLAST of PI0019782 vs. NCBI nr
Match: KAA0052247.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE  ST+ TT D+DIHYIETSNEW+QWRD+L E MFS+WELHNQ
Sbjct: 204 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 257

[Close]

BLAST of PI0019782 vs. NCBI nr
Match: TYK01811.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGDSTYATTTDEDIHYIETSNEWNQWRDELAERMFSDWELHNQ 55
           MTN DI DD+DE  ST+ TT D+DIHYIETSNEW+QWRD+L E MFS+WELHNQ
Sbjct: 207 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 260

The following BLAST results are available for this feature:

BLAST of PI0019782 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL48	6.7e-15	77.78	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	6.7e-15	77.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UFY9	1.1e-14	75.93	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BPW4	1.5e-14	74.07	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UCP5	1.5e-14	74.07	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of PI0019782 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067470.1	1.4e-14	77.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	1.4e-14	77.78	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0053146.1	2.4e-14	75.93	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nucleas...	[more]
KAA0052247.1	3.1e-14	74.07	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK01811.1	3.1e-14	74.07	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0019782 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019782.1	PI0019782.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding