Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATGTACCTATTGTACCTCCACTAGTTCACAGGGGATGTGTTCGAGTGGAAGAAGTTGAACTTTATGAAATTTACCATAATGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGATAATGATGCCAGCATTTGAAGCTGGATATTGTGATTCTGAGGTTAGTACAGGATATTATGACTCAGGGGTCGGTCTATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGACATGGACACAGATGCGGCCGCGGAAAATATAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGTCAGGACAGCCTAGAGTTCAGAGTCGACGACGACAACCAACTCGAAATCAACAACGTTCGGATTGTGGAACACATTGA
mRNA sequence
ATGTACGATGTACCTATTGTACCTCCACTAGTTCACAGGGGATGTGTTCGAGTGGAAGAAGTTGAACTTTATGAAATTTACCATAATGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGATAATGATGCCAGCATTTGAAGCTGGATATTGTGATTCTGAGGTTAGTACAGGATATTATGACTCAGGGGTCGGTCTATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGACATGGACACAGATGCGGCCGCGGAAAATATAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGTCAGGACAGCCTAGAGTTCAGAGTCGACGACGACAACCAACTCGAAATCAACAACGTTCGGATTGTGGAACACATTGA
Coding sequence (CDS)
ATGTACGATGTACCTATTGTACCTCCACTAGTTCACAGGGGATGTGTTCGAGTGGAAGAAGTTGAACTTTATGAAATTTACCATAATGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGATAATGATGCCAGCATTTGAAGCTGGATATTGTGATTCTGAGGTTAGTACAGGATATTATGACTCAGGGGTCGGTCTATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGACATGGACACAGATGCGGCCGCGGAAAATATAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGTCAGGACAGCCTAGAGTTCAGAGTCGACGACGACAACCAACTCGAAATCAACAACGTTCGGATTGTGGAACACATTGA
Protein sequence
MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYCDSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQQELENQEESGQPRVQSRRRQPTRNQQRSDCGTH
Homology
BLAST of PI0019761 vs. ExPASy TrEMBL
Match:
A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 2.2e-55
Identity = 116/153 (75.82%), Postives = 129/153 (84.31%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRG VRVEEVEL E+YHNVEEVP TQTQSQTGYGS M+MMP F AGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
DSEVSTGYYD+G+G SSYMDVGPS SYMHGHG G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGR--GYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++ CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0019761 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 114/153 (74.51%), Postives = 127/153 (83.01%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRGCVRVEE EL ++YHNVEEVP TQTQSQTGYGS M MMP FEAGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV GYYD+GVG SSSY+DV PSTSYMHGH G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSR--GYGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++R CGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0019761 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 114/153 (74.51%), Postives = 127/153 (83.01%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRGCVRVEE EL ++YHNVEEVP TQTQSQTGYGS M MMP FEAGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV GYYD+GVG SSSY+DV PSTSYM HGHR G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++ CGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0019761 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 4.3e-51
Identity = 112/153 (73.20%), Postives = 125/153 (81.70%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
+YD+PIVPP VHR RVEE EL E+YHNVEEVP TQTQSQTGYGS M MMP F AGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
DSEVS GYYD+ VG SSYMDVGPSTSYM+GHG G G++NEYLY+EAPT+VS+ QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGR--GYGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE +NQE+ Q RVQSRRRQP RN+Q S CGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0019761 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MY +PIVPP +HRG V+VEE EL E+YHNVEE+ TQ Q+QTGYGS MIMMP F GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV+T YYDSGVG SSSYMDVGPSTSYMHGH H G++NEYLY+EAPT VS+ QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QELENQEESGQPRVQSR 138
QE ENQEE Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
BLAST of PI0019761 vs. NCBI nr
Match:
KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 224.9 bits (572), Expect = 4.6e-55
Identity = 116/153 (75.82%), Postives = 129/153 (84.31%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRG VRVEEVEL E+YHNVEEVP TQTQSQTGYGS M+MMP F AGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
DSEVSTGYYD+G+G SSYMDVGPS SYMHGHG G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGR--GYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++ CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0019761 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 114/153 (74.51%), Postives = 127/153 (83.01%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRGCVRVEE EL ++YHNVEEVP TQTQSQTGYGS M MMP FEAGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV GYYD+GVG SSSY+DV PSTSYMHGH G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSR--GYGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++R CGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0019761 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 221.1 bits (562), Expect = 6.6e-54
Identity = 114/153 (74.51%), Postives = 127/153 (83.01%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MYD+PIVPP VHRGCVRVEE EL ++YHNVEEVP TQTQSQTGYGS M MMP FEAGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV GYYD+GVG SSSY+DV PSTSYM HGHR G G++NEYLY+EAP +VS+ QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE ENQE+ Q RVQSRRRQPTRN++ CGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0019761 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 210.7 bits (535), Expect = 9.0e-51
Identity = 112/153 (73.20%), Postives = 125/153 (81.70%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
+YD+PIVPP VHR RVEE EL E+YHNVEEVP TQTQSQTGYGS M MMP F AGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
DSEVS GYYD+ VG SSYMDVGPSTSYM+GHG G G++NEYLY+EAPT+VS+ QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGR--GYGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QELENQEESGQPRVQSRRRQPTRNQQRSDCGTH 154
QE +NQE+ Q RVQSRRRQP RN+Q S CGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0019761 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 188.0 bits (476), Expect = 6.2e-44
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 0
Query: 1 MYDVPIVPPLVHRGCVRVEEVELYEIYHNVEEVPLVTQTQSQTGYGSLMIMMPAFEAGYC 60
MY +PIVPP +HRG V+VEE EL E+YHNVEE+ TQ Q+QTGYGS MIMMP F GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DSEVSTGYYDSGVGLSSSYMDVGPSTSYMHGHGHRCGRGKYNEYLYYEAPTNVSNPQEYQ 120
D EV+T YYDSGVG SSSYMDVGPSTSYMHGH H G++NEYLY+EAPT VS+ QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QELENQEESGQPRVQSR 138
QE ENQEE Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CXX3 | 2.2e-55 | 75.82 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 1.1e-54 | 74.51 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 3.2e-54 | 74.51 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 4.3e-51 | 73.20 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 3.0e-44 | 72.26 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0049532.1 | 4.6e-55 | 75.82 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062642.1 | 2.3e-54 | 74.51 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 6.6e-54 | 74.51 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 9.0e-51 | 73.20 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0025972.1 | 6.2e-44 | 72.26 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
