Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAGTTGCTAAGTGTGGGGTGTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCATACTTAATTGAAGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACTTACAATTCTGGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAATGACAACCATAAGCCTTCACAAGCAACTTCTTCTTCCAATAATCAAGGTACAAATCTTGAAGATCTAGTAAAAGCTCTAGCTACTAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGTTAGAAGAAAAAGGTAAACTTCCGGTCCAACCGGATCGTGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAGACTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGGTAACTTCTATCCCTATCCTTCTTGAAAATAATGATGAGAAAAAGGAAGAAAAAGTTGAAACAAATGCTTTACCATCCAATTCTGACAAAGGTAAATCTCATCTTTTTTATTTTTCTCCTTATGTTCCTAAAGCTCATTTTCCTTCTAGGTTGGCTCCAAAGAAAAATGAATCACCCATGGAAGAAGAACTCTTGGAAATGTTTAGAAAGGTGCAAATCAATTTGCCTTTGTTTGATGCTATCCAACAAGTTCCAAGGTATGCCAAGTTTCTTAAAGAGTTGTGCACCAACAAGAGGAAAATCAAAGAAAAACCCATGGTAAGTCATAATGTTTTCGCTCTTTTAAAGAATAGTATTCCGGAAAAACAAAATGACCCCGGTATGTTTTCTCTTCCTTGCATAATAGAAAATAGACCAATTTCTCATGCAATGCTTCACTGAGGAGCATCCATAA
mRNA sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAGTTGCTAAGTGTGGGGTGTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCATACTTAATTGAAGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACTTACAATTCTGGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAATGACAACCATAAGCCTTCACAAGCAACTTCTTCTTCCAATAATCAAGGTACAAATCTTGAAGATCTAGTAAAAGCTCTAGCTACTAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGTTAGAAGAAAAAGGTAAACTTCCGGTCCAACCGGATCGTGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAGACTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGAAAATAGACCAATTTCTCATGCAATGCTTCACTGAGGAGCATCCATAA
Coding sequence (CDS)
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAGTTGCTAAGTGTGGGGTGTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCATACTTAATTGAAGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACTTACAATTCTGGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAATGACAACCATAAGCCTTCACAAGCAACTTCTTCTTCCAATAATCAAGGTACAAATCTTGAAGATCTAGTAAAAGCTCTAGCTACTAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAACCGCAATTGGTAAGTTAGAAGAAAAAGGTAAACTTCCGGTCCAACCGGATCGTGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAGACTCTTGAAACCCCTCCAAGTGAAGAAAAAAAGAAAATAGACCAATTTCTCATGCAATGCTTCACTGAGGAGCATCCATAA
Protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFLMQCFTEEHP
Homology
BLAST of PI0019733 vs. ExPASy TrEMBL
Match:
A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 5.0e-61
Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG KV KCGVCGLVGHPNDKC +IE+ N++R+YDPHSNTYNSGWRDNP
Sbjct: 169 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNP 228
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KAL TNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 229 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGK 288
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE 166
GKLP QPD AN+SAISLRSGK L+TP ++EKKK ++ L++ F +E
Sbjct: 289 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKKETPKEEELLEIFRKE 336
BLAST of PI0019733 vs. ExPASy TrEMBL
Match:
A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 115/152 (75.66%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG KV KCGVCGLVGHPNDKCP +IE+ N++R+YDPHSNTYNSGWRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQ+MKQQ++ LTTAI K++ K
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKK 153
GKLP QPD AN+SAISLRSGK L+TP ++EKK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEKK 257
BLAST of PI0019733 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 4.3e-60
Identity = 115/158 (72.78%), Postives = 135/158 (85.44%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG +KV KCGVC LVGHPNDKCP +IE+ N++RKYDP+ NTYNSGWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA +S+NQGTNLED++KALATNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL 159
GKLP QPD AN+SAISLRSGK L+TP ++EKK + L
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLL 214
BLAST of PI0019733 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG +KV KCGVCGLVGHPNDKCP +IE+ N++RKYDPH NTYNSGWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKK 153
GKL Q + AN+SA+SLRSGK L+TP ++EKK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKK 293
BLAST of PI0019733 vs. ExPASy TrEMBL
Match:
A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)
HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 113/151 (74.83%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 2 TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPN 61
TTLLTSFVQG +KV KCGVCGLVGH N+KCP +IE+ N++R+YDPHSNTYNSGWRDNPN
Sbjct: 209 TTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPN 268
Query: 62 LRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEKG 121
LRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQEMKQQ++ LTTAI K++ KG
Sbjct: 269 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 328
Query: 122 KLPVQPDRANISAISLRSGKTLETPPSEEKK 153
KLP Q D AN+SAISLRSGK L+TP ++EKK
Sbjct: 329 KLPAQLDHANVSAISLRSGKILDTPTTKEKK 359
BLAST of PI0019733 vs. NCBI nr
Match:
KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60
Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG KV KCGVCGLVGHPNDKC +IE+ N++R+YDPHSNTYNSGWRDNP
Sbjct: 169 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNP 228
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KAL TNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 229 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGK 288
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE 166
GKLP QPD AN+SAISLRSGK L+TP ++EKKK ++ L++ F +E
Sbjct: 289 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKKETPKEEELLEIFRKE 336
BLAST of PI0019733 vs. NCBI nr
Match:
TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 5.2e-60
Identity = 115/152 (75.66%), Postives = 134/152 (88.16%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG KV KCGVCGLVGHPNDKCP +IE+ N++R+YDPHSNTYNSGWRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQ+MKQQ++ LTTAI K++ K
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKK 153
GKLP QPD AN+SAISLRSGK L+TP ++EKK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEKK 257
BLAST of PI0019733 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 240.7 bits (613), Expect = 8.8e-60
Identity = 115/158 (72.78%), Postives = 135/158 (85.44%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG +KV KCGVC LVGHPNDKCP +IE+ N++RKYDP+ NTYNSGWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA +S+NQGTNLED++KALATNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL 159
GKLP QPD AN+SAISLRSGK L+TP ++EKK + L
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLL 214
BLAST of PI0019733 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 238.8 bits (608), Expect = 3.4e-59
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG +KV KCGVCGLVGHPNDKCP +IE+ N++RKYDPH NTYNSGWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQEMKQQ++ LTTAI K++ K
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKK 153
GKL Q + AN+SA+SLRSGK L+TP ++EKK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKK 293
BLAST of PI0019733 vs. NCBI nr
Match:
XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])
HSP 1 Score: 237.3 bits (604), Expect = 9.8e-59
Identity = 111/158 (70.25%), Postives = 134/158 (84.81%), Query Frame = 0
Query: 1 MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNP 60
MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP +IE+ N++R+YDPH NTYN GWRDNP
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHLTTAIGKLEEK 120
NLRWGNDN K +QA +S+NQGTNLED++KALATNT SFQQ+MKQQ++ LTT I K++ K
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL 159
GKLP QPD N+SAISLRSGK L+TP ++EKK + L
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLL 213
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V0Q7 | 5.0e-61 | 70.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CB46 | 2.5e-60 | 75.66 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| E5GBZ4 | 4.3e-60 | 72.78 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3CRR8 | 1.6e-59 | 74.34 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7VQ60 | 4.7e-59 | 74.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061138.1 | 1.0e-60 | 70.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK07549.1 | 5.2e-60 | 75.66 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| ADN33993.1 | 8.8e-60 | 72.78 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
| KAA0047407.1 | 3.4e-59 | 74.34 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
| XP_008465649.1 | 9.8e-59 | 70.25 | PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
