PI0019704 (gene) Melon (PI 482460) v1

Overview
NamePI0019704
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptiongag_pre-integrs domain-containing protein
Locationchr10: 7847986 .. 7848337 (-)
RNA-Seq ExpressionPI0019704
SyntenyPI0019704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCTCTTCAATCCCATGAGCACATGTTGAAATTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTATTCTAGAGGACGATCAGGTAGAAGAAGAGGTGGACGTGGCGGTAGAAATGGACGATTCAAAGACGTAAAAAATTTAGAGTCAGAGAGCAGAGACAATCAATCTTCTTCAAATAGAAGAAGAGGAAGAAGTTCACATAGAGGAAGGGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCGAAAACCACTCTAA

mRNA sequence

ATGGGATCTCTTCAATCCCATGAGCACATGTTGAAATTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTATTCTAGAGGACGATCAGGTAGAAGAAGAGGTGGACGTGGCGCAGAGACAATCAATCTTCTTCAAATAGAAGAAGAGGAAGAAGTTCACATAGAGGAAGGGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCGAAAACCACTCTAA

Coding sequence (CDS)

ATGGGATCTCTTCAATCCCATGAGCACATGTTGAAATTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTATTCTAGAGGACGATCAGGTAGAAGAAGAGGTGGACGTGGCGCAGAGACAATCAATCTTCTTCAAATAGAAGAAGAGGAAGAAGTTCACATAGAGGAAGGGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCGAAAACCACTCTAA

Protein sequence

MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRGAETINLLQIEEEEEVHIEEGAEVVVVEIFLTYNVSIVDVMDIFKQIVGLRRLILIKRKPL
Homology
BLAST of PI0019704 vs. ExPASy TrEMBL
Match: A0A5A7UV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001240 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 1  MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRGA 43
          MGSLQSHE  LKLFDSTPS+E FHMQS SRG+ G RRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0019704 vs. ExPASy TrEMBL
Match: A0A5D3CHY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 1  MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRGA 43
          MGSLQSHE  LKLFDSTPS+E FHMQS SRG+ G RRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0019704 vs. ExPASy TrEMBL
Match: A0A5C7IKI5 (gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003901 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1   MGSLQSHEHMLKLFDSTPSEEAFHMQSY----SRGRSGRRRGGRGAETINLLQIEEEEEV 60
           MGSLQSHE  LK FD+TP E+AF   +Y    SRGR G R GGR +E+ N     +EE +
Sbjct: 143 MGSLQSHELRLKQFDTTPLEQAFQSHAYFNQSSRGRRGGRGGGRNSESRNNNNDSKEESI 202

Query: 61  HIEEGAEVVV 67
            I +   ++V
Sbjct: 203 KIGDDKRLLV 212

BLAST of PI0019704 vs. NCBI nr
Match: XP_038877452.1 (uncharacterized protein LOC120069734 [Benincasa hispida])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 74/100 (74.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 1   MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRG--------------AETIN 60
           MGSLQSHE  LKLFDS P E+AFHMQS SRGRSG RR GRG              AETIN
Sbjct: 110 MGSLQSHELRLKLFDSNPLEKAFHMQSSSRGRSGGRRVGRGNRGNGRSNVVTSQRAETIN 169

Query: 61  LLQIEEEEEVHIEEGAEVVVVEIFLTYNVSIVDVMDIFKQ 87
           LLQIEE EEV IE+ AEVVVVEIFLTYNVSIVDVMDIFKQ
Sbjct: 170 LLQIEEGEEVQIEQEAEVVVVEIFLTYNVSIVDVMDIFKQ 209

BLAST of PI0019704 vs. NCBI nr
Match: KAA0058944.1 (hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 1  MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRGA 43
          MGSLQSHE  LKLFDSTPS+E FHMQS SRG+ G RRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0019704 vs. NCBI nr
Match: TYK10980.1 (hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 1  MGSLQSHEHMLKLFDSTPSEEAFHMQSYSRGRSGRRRGGRGA 43
          MGSLQSHE  LKLFDSTPS+E FHMQS SRG+ G RRGG G+
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGS 42

BLAST of PI0019704 vs. NCBI nr
Match: XP_038904397.1 (uncharacterized protein LOC120090760 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 20  EEAFHMQSYSRGRSGRRRGGRGAETINLLQIEEEEEVHIEEGAEVVVVEIFLTYNVSIVD 79
           EE+ H+ + S            A+TI LLQIEE+ +V +EE AEV VV+IFLTYNVSIV+
Sbjct: 53  EESKHLPTLSINSLMGYLQSHRAKTIKLLQIEEQGQVQVEEEAEVEVVKIFLTYNVSIVE 112

Query: 80  VMDIFK 86
           VM IF+
Sbjct: 113 VMGIFQ 118

BLAST of PI0019704 vs. NCBI nr
Match: TXG68966.1 (hypothetical protein EZV62_003901 [Acer yangbiense])

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-04
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1   MGSLQSHEHMLKLFDSTPSEEAFHMQSY----SRGRSGRRRGGRGAETINLLQIEEEEEV 60
           MGSLQSHE  LK FD+TP E+AF   +Y    SRGR G R GGR +E+ N     +EE +
Sbjct: 143 MGSLQSHELRLKQFDTTPLEQAFQSHAYFNQSSRGRRGGRGGGRNSESRNNNNDSKEESI 202

Query: 61  HIEEGAEVVV 67
            I +   ++V
Sbjct: 203 KIGDDKRLLV 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UV009.6e-0776.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHY99.6e-0776.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5C7IKI53.4e-0447.14gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62... [more]
Match NameE-valueIdentityDescription
XP_038877452.11.6e-2474.00uncharacterized protein LOC120069734 [Benincasa hispida][more]
KAA0058944.12.0e-0676.19hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa][more]
TYK10980.12.0e-0676.19hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa][more]
XP_038904397.14.2e-0453.03uncharacterized protein LOC120090760 [Benincasa hispida][more]
TXG68966.17.1e-0447.14hypothetical protein EZV62_003901 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0019704.1PI0019704.1mRNA