Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCAGAAATTTCACTGATAAAAAGAGAAGATAATCCACAGTTGAAGTCACCTACAAGCATAAGAAAAGAACCACGTGAAGGAACAGGTACCTCTAACTCTAGAAAGGGTGAGCCATCCATTAGCACCACAAAGAGCACGATCTTAAAAGATGAAAAGGCTTCAAACCCTCCAGTCTTGTGCTATGTCCCTCAATCGAGGCGTAAGAAAGGTGAGTTATTGTTCGTGGAGTGCCCAAAAGGCTTGAAGGTTGGTGATGTCGAAATCTTAAAAGAAAGCTTCTCTACACCGTTGACTAAGATAACGAAGCAAGAGATAAAGTTAAACATGACAGAAGCAAACTTGCCTCAAAGGCAGACGAAAGACGAGTTTGACCCCAAGGCTTACAAATTGATGGCGAAAGCATGTTATGACTTCACAACTCGCACTAAGTTCGAAAACTGGAAAATTTATGAACAATCCGAGCTTTCCTTAACCCAAAAGAAGCTCTTACGGGAAGGACATGTATACCCGTGTCAAGAAAAGGACTCGGATACAAATCATCAGAACCGATGCATATAA
mRNA sequence
ATGCCTGCAGAAATTTCACTGATAAAAAGAGAAGATAATCCACAGTTGAAGTCACCTACAAGCATAAGAAAAGAACCACGTGAAGGAACAGGTACCTCTAACTCTAGAAAGGGTGAGCCATCCATTAGCACCACAAAGAGCACGATCTTAAAAGATGAAAAGGCTTCAAACCCTCCAGTCTTGTGCTATGTCCCTCAATCGAGGCGTAAGAAAGGTGAGTTATTGTTCGTGGAGTGCCCAAAAGGCTTGAAGGTTGGTGATGTCGAAATCTTAAAAGAAAGCTTCTCTACACCGTTGACTAAGATAACGAAGCAAGAGATAAAGTTAAACATGACAGAAGCAAACTTGCCTCAAAGGCAGACGAAAGACGAGTTTGACCCCAAGGCTTACAAATTGATGGCGAAAGCATGTTATGACTTCACAACTCGCACTAAGTTCGAAAACTGGAAAATTTATGAACAATCCGAGCTTTCCTTAACCCAAAAGAAGCTCTTACGGGAAGGACATGTATACCCGTGTCAAGAAAAGGACTCGGATACAAATCATCAGAACCGATGCATATAA
Coding sequence (CDS)
ATGCCTGCAGAAATTTCACTGATAAAAAGAGAAGATAATCCACAGTTGAAGTCACCTACAAGCATAAGAAAAGAACCACGTGAAGGAACAGGTACCTCTAACTCTAGAAAGGGTGAGCCATCCATTAGCACCACAAAGAGCACGATCTTAAAAGATGAAAAGGCTTCAAACCCTCCAGTCTTGTGCTATGTCCCTCAATCGAGGCGTAAGAAAGGTGAGTTATTGTTCGTGGAGTGCCCAAAAGGCTTGAAGGTTGGTGATGTCGAAATCTTAAAAGAAAGCTTCTCTACACCGTTGACTAAGATAACGAAGCAAGAGATAAAGTTAAACATGACAGAAGCAAACTTGCCTCAAAGGCAGACGAAAGACGAGTTTGACCCCAAGGCTTACAAATTGATGGCGAAAGCATGTTATGACTTCACAACTCGCACTAAGTTCGAAAACTGGAAAATTTATGAACAATCCGAGCTTTCCTTAACCCAAAAGAAGCTCTTACGGGAAGGACATGTATACCCGTGTCAAGAAAAGGACTCGGATACAAATCATCAGAACCGATGCATATAA
Protein sequence
MPAEISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCYVPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKDEFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEKDSDTNHQNRCI
Homology
BLAST of PI0019633 vs. ExPASy TrEMBL
Match:
A0A5A7V356 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003490 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 1.2e-55
Identity = 118/173 (68.21%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP + GT +S K E S ST KS IL DEK SNPP+LCY
Sbjct: 205 EVPLVNREDNLQLKSLAS--KEPHKSIGTFHSEKSEASTSTAKSVILMDEKTSNPPILCY 264
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE +GLKVGD+E+LKESF+TPLTKITKQEIK+++TEA+LP+R+TKD
Sbjct: 265 VPLSRRKKGESPFVESSQGLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPKRRTKD 324
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA YDFTT T+F++ KI+EQ ++S TQKKLLREGH P K
Sbjct: 325 EFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKISSTQKKLLREGHAIPMSRK 375
BLAST of PI0019633 vs. ExPASy TrEMBL
Match:
A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 6.1e-55
Identity = 119/173 (68.79%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP + GT +S K E S +T KS IL DEK SNPP+L Y
Sbjct: 280 EVLLVNREDNLQLKSLAS--KEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRY 339
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKVG++E+LKESF+TPLTKITKQEIK+++TEA+LPQR+TKD
Sbjct: 340 VPLSRRKKGESPFVESPQGLKVGEIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKD 399
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
FDPKAYKLMAKA YDFTT T+F++ KIYEQ +LS TQKKLLREGHV P K
Sbjct: 400 GFDPKAYKLMAKAGYDFTTHTEFKSLKIYEQPKLSSTQKKLLREGHVIPMSRK 450
BLAST of PI0019633 vs. ExPASy TrEMBL
Match:
A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 1.8e-54
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP GT +S K E S ST KS IL DEK SNP +L Y
Sbjct: 647 EVPLVNREDNLQLKSLAS--KEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRY 706
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKVGD+E+LKESF+TPLTKITKQEIK+++TEA+LPQR+TKD
Sbjct: 707 VPLSRRKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKD 766
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA YDFTT T+F++ KI+EQ +LS TQKKLLREGH P K
Sbjct: 767 EFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHAIPMSRK 817
BLAST of PI0019633 vs. ExPASy TrEMBL
Match:
A0A5D3E3J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00350 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 5.1e-54
Identity = 119/173 (68.79%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ LI REDN QLKS S +EP + TGT +S K E S STTKS IL DEK SNPP+L Y
Sbjct: 466 EVPLINREDNLQLKSLAS--REPHKSTGTFHSGKSEASTSTTKSVILMDEKTSNPPILHY 525
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKV D+E+LKESF+TPL+KITKQEIK+++TEA+LPQR TKD
Sbjct: 526 VPLSRRKKGESPFVESPQGLKVDDIEVLKESFTTPLSKITKQEIKIDLTEASLPQRWTKD 585
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA Y F T T+F++ KI+EQ +LS TQKKLLREGHV P K
Sbjct: 586 EFDPKAYKLMAKAGYGFPTHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRK 636
BLAST of PI0019633 vs. ExPASy TrEMBL
Match:
A0A5A7SU72 (Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2137G00090 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.5e-53
Identity = 118/176 (67.05%), Postives = 135/176 (76.70%), Query Frame = 0
Query: 1 MPAEISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPV 60
M EIS + REDN QLKS S KEP + TGT NS KGE S TTKS IL DEK SNPP+
Sbjct: 197 MLVEISFVNREDNLQLKSLVS--KEPHKSTGTFNSEKGEASTCTTKSMILMDEKTSNPPI 256
Query: 61 LCYVPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQ 120
LCYV SRRKKGE FVE P+GLKVGD++ILKESF+TPLTKITKQEIK+ + EA+LPQ Q
Sbjct: 257 LCYVSLSRRKKGESPFVEFPQGLKVGDIKILKESFTTPLTKITKQEIKIYLMEASLPQWQ 316
Query: 121 TKDEFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
TKD FDPKAYKLMAKA YDFT +F++ + +EQ +LS QKKLLREGH P +K
Sbjct: 317 TKDRFDPKAYKLMAKAGYDFTAHIEFKSLRTHEQPKLSSIQKKLLREGHAIPVSKK 370
BLAST of PI0019633 vs. NCBI nr
Match:
KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])
HSP 1 Score: 226.1 bits (575), Expect = 2.5e-55
Identity = 118/173 (68.21%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP + GT +S K E S ST KS IL DEK SNPP+LCY
Sbjct: 205 EVPLVNREDNLQLKSLAS--KEPHKSIGTFHSEKSEASTSTAKSVILMDEKTSNPPILCY 264
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE +GLKVGD+E+LKESF+TPLTKITKQEIK+++TEA+LP+R+TKD
Sbjct: 265 VPLSRRKKGESPFVESSQGLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPKRRTKD 324
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA YDFTT T+F++ KI+EQ ++S TQKKLLREGH P K
Sbjct: 325 EFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKISSTQKKLLREGHAIPMSRK 375
BLAST of PI0019633 vs. NCBI nr
Match:
KAA0051585.1 (uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa])
HSP 1 Score: 223.8 bits (569), Expect = 1.3e-54
Identity = 119/173 (68.79%), Postives = 139/173 (80.35%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP + GT +S K E S +T KS IL DEK SNPP+L Y
Sbjct: 280 EVLLVNREDNLQLKSLAS--KEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRY 339
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKVG++E+LKESF+TPLTKITKQEIK+++TEA+LPQR+TKD
Sbjct: 340 VPLSRRKKGESPFVESPQGLKVGEIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKD 399
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
FDPKAYKLMAKA YDFTT T+F++ KIYEQ +LS TQKKLLREGHV P K
Sbjct: 400 GFDPKAYKLMAKAGYDFTTHTEFKSLKIYEQPKLSSTQKKLLREGHVIPMSRK 450
BLAST of PI0019633 vs. NCBI nr
Match:
TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 222.2 bits (565), Expect = 3.6e-54
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ L+ REDN QLKS S KEP GT +S K E S ST KS IL DEK SNP +L Y
Sbjct: 647 EVPLVNREDNLQLKSLAS--KEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRY 706
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKVGD+E+LKESF+TPLTKITKQEIK+++TEA+LPQR+TKD
Sbjct: 707 VPLSRRKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKD 766
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA YDFTT T+F++ KI+EQ +LS TQKKLLREGH P K
Sbjct: 767 EFDPKAYKLMAKAGYDFTTHTEFKSLKIHEQPKLSSTQKKLLREGHAIPMSRK 817
BLAST of PI0019633 vs. NCBI nr
Match:
KAA0032810.1 (uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK30368.1 uncharacterized protein E5676_scaffold575G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 220.7 bits (561), Expect = 1.1e-53
Identity = 119/173 (68.79%), Postives = 138/173 (79.77%), Query Frame = 0
Query: 4 EISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPVLCY 63
E+ LI REDN QLKS S +EP + TGT +S K E S STTKS IL DEK SNPP+L Y
Sbjct: 466 EVPLINREDNLQLKSLAS--REPHKSTGTFHSGKSEASTSTTKSVILMDEKTSNPPILHY 525
Query: 64 VPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQTKD 123
VP SRRKKGE FVE P+GLKV D+E+LKESF+TPL+KITKQEIK+++TEA+LPQR TKD
Sbjct: 526 VPLSRRKKGESPFVESPQGLKVDDIEVLKESFTTPLSKITKQEIKIDLTEASLPQRWTKD 585
Query: 124 EFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
EFDPKAYKLMAKA Y F T T+F++ KI+EQ +LS TQKKLLREGHV P K
Sbjct: 586 EFDPKAYKLMAKAGYGFPTHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRK 636
BLAST of PI0019633 vs. NCBI nr
Match:
KAA0033081.1 (gypsy-like retrotransposase [Cucumis melo var. makuwa] >TYK04639.1 gypsy-like retrotransposase [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 5.3e-53
Identity = 118/176 (67.05%), Postives = 135/176 (76.70%), Query Frame = 0
Query: 1 MPAEISLIKREDNPQLKSPTSIRKEPREGTGTSNSRKGEPSISTTKSTILKDEKASNPPV 60
M EIS + REDN QLKS S KEP + TGT NS KGE S TTKS IL DEK SNPP+
Sbjct: 197 MLVEISFVNREDNLQLKSLVS--KEPHKSTGTFNSEKGEASTCTTKSMILMDEKTSNPPI 256
Query: 61 LCYVPQSRRKKGELLFVECPKGLKVGDVEILKESFSTPLTKITKQEIKLNMTEANLPQRQ 120
LCYV SRRKKGE FVE P+GLKVGD++ILKESF+TPLTKITKQEIK+ + EA+LPQ Q
Sbjct: 257 LCYVSLSRRKKGESPFVEFPQGLKVGDIKILKESFTTPLTKITKQEIKIYLMEASLPQWQ 316
Query: 121 TKDEFDPKAYKLMAKACYDFTTRTKFENWKIYEQSELSLTQKKLLREGHVYPCQEK 177
TKD FDPKAYKLMAKA YDFT +F++ + +EQ +LS QKKLLREGH P +K
Sbjct: 317 TKDRFDPKAYKLMAKAGYDFTAHIEFKSLRTHEQPKLSSIQKKLLREGHAIPVSKK 370
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V356 | 1.2e-55 | 68.21 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UD46 | 6.1e-55 | 68.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3C0W6 | 1.8e-54 | 68.79 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3E3J4 | 5.1e-54 | 68.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7SU72 | 2.5e-53 | 67.05 | Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062018.1 | 2.5e-55 | 68.21 | uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa] | [more] |
| KAA0051585.1 | 1.3e-54 | 68.79 | uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa] | [more] |
| TYK05005.1 | 3.6e-54 | 68.79 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0032810.1 | 1.1e-53 | 68.79 | uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK3... | [more] |
| KAA0033081.1 | 5.3e-53 | 67.05 | gypsy-like retrotransposase [Cucumis melo var. makuwa] >TYK04639.1 gypsy-like re... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
