PI0019549 (gene) Melon (PI 482460) v1

Overview


Name	PI0019549
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	chr12: 23945193 .. 23948668 (+)
RNA-Seq Expression	PI0019549
Synteny	PI0019549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTGTTCTCTCTCCCGGCGTCTCTGCTCCAACTCACCGGCCGGCTGGCCACCGACGACAACTACTTGATCTTCTTGCCCTTCTCCTCTCTCTTGGTAATCAGTTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCACACACACACACACATATATATGGTCGAGACACCTATCAACAAGTGAGCTATGCGAATGTTTGTTGCTTATTCATGTGCGTGTGTAAGCAATAGATGGGTTCTTCACTGTTGAATTGACTGATTTTTGCAGTTTTAGTTATGAAGAATCTAATGGAATTTATGTTAAAAGATGGGTATTTCAAGACATCTAACTCTAGGTTATTTTTTTAATGTAATTTTCTTTGTGTTTAGGGCTACGTGAAGGTATCGTGCAGTTATCTTAGATAGTTGAATTTAGAATTTTTGGTAATTTACATGAAAACTCGTTTAGTTATGTCGCTAGGAAACTAAAGAATAGTGAATTGATCTGGAATTTTACTCGTTAGTACTATCCTATAAGGGGGAACTAGCATACATGAAAGAGGCCCAATGCTGCATGCCCAAAACCTGAAAAGTGAACTTAATGTTGAATTAGTTTTGATTCACCATATCTGAATGTTATCGTGAAAGAGGTGATGATACTATTGGAGTTAGCTTAAGATCTCCTAAGTTGTAAGATTGAAACAGATTTAATCATGTCAATTTGTTCCTTGATACTTCTTAGATTAAGAACCTAATAGGTAGCCCTATTGTAAACGCGATGCCTTGCATCATGGTTTTCTTCTCTTCTTATTAAAATCATTTCTCAAGGCGCCCTATGAAACTAGACATGTTACTCTAGCTCTTACATACTGTTAAGAGAGTTGCAGTCAATTCTCCCCAAAAGTGTAATTGATAGGAAAAAATGCAATGAGTAATCATATATTTATTGCTCAATAGTGCATTCCAATCTTCTTCATACTTAGGCCTAACACTTTAGTTGCTTCTCTTTCTAGCCCATGTCTTTTTTAGGAGTAACATCCGTACAAGTAAAGCTTGTAAGGATAGTAATATAGTCTTGACGAAATAACTCATCAAAAATTTCTTCTTCAAGCTACGTATATGTATGTGTTATAGATCTTGGAGGTTTGTGGGAATAATTGAAGAATCATGAAAGTAGTCTAGCTAATCTTACATGCCTGCACTTGTGTTAATGCCCGAAGATTGATATTTCAATTCTTAAGAGTTGGTGGAAAAGAGATTTCAACTTCTTGGCTCCGTTGGTTTTGTAGAATTTTGCCTCTTTTTTTTTCCTTGCGTTATCAATTTTTTGCTATTTTTATAGAATTTTGGTTTATTTTCCTTGAACTTCTCAATTTATTTGCCTTCATTTTTAATCAAGATGTTGGTTTTGTCTGGTTTTTCTATTTTTTTTTTGTTAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTAGGAGCTCTTATTCAATTATTCTTGAGTGAATACTTTGAAATGTCAACACTCATTTTTTCTAACCATTTCATTATGGACATCTATTAATTCATGACATTAATAAATTGATAAATAATGTACACCCATTGCATGTGTTAATATGGGTTCTTTCACCGTCCATTCAGAAGAGCTATAAATATGTTGACATCTTTCTTCACCTATTCAAGCAATAGGAATTGATCATTTGGTAGTGGTGTCTTTCCCCTGTTAAAAAAAAGCTGGTTTAGATTGTTGTTATACTTTAGTAAACCATATCTGACACACTTTTAAATAACTTGTAATATCATCTTGCAGTCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTAATATTTTGAGGTTGTTCGACTCTCTAATTGGTTCCCATTTCAGGAAATTTTTTCTAATGATTGGATTTGTTCTATCTTGATTTTTCTTCTTTATACACATCCAATTATGCATTCATGAGATATATAGCTTTTGGATCCATGTGAAGAGTGATCCTTCTAAGAAAAAAAATTTCCAACAAAATCGCCTTTTTTTGAAGAACGCATGTTGGACCTTGTAGCTTTGCTAGAACACCGTTACTTTTTTAATTGAATAGAATTCAAGGAGATATATATACAACATATAGAACAGATCCTGTTCAAGTAAGGTCATGGTATATAAAATAAATAAATTTTACTACTTTAACTTAGGGTTGTGTCTATTTAGTTCTATAACTTTTACAAGATTCAATTATTGTCCAAATTTTGAATAGCTATTGTACGTAGTTCTTACCATCAACACTAGTAACTCACAATGACATGATATATGTATTCGACAAATATTAGTTGATTCGATGTAGCATGACAGAAAAATAGTAGGAAACAGATAACTATAGAAAATAATAGTAGCACATAAAAGGGATTTGATACGTTGCTTTGAAAAGATAGTATGTTGCATATGCTTGTTTATTTTATTCAATTGTCCCCTTTTTTCTGCATTACAATGTTAATAAGTACGACTACACGTGATTAATTACACTTAAAAGTTTCAAAGCCATATTTAAAACTTTTTAAATTGATAATACCTATTAGGCACAACTATGAAGTTACACTAGATCTCAAGAACATAGTTGTACAACCTAGAGAATAGATCCTATTCAAGTAGGGTCATAGATCCTATTCAAGTAGGGTCATAGATCCATAATTTAATCTTAAACATATATGCATACCCATTTGCAATTGTGAAGTAAAACCCAACGTACCAAGATGTTTGAGGTTGAGGCCCAAACAAATAGTGTCCCAAATGAATGGTCTTTACTCTTTCTCCATGGTTGGATTTGGTGAACCCAATGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTTTTAGGGAAAAGCAAAGCACATGGGAAAATGGTAGGGGCAATATAGCAAACAGAAGGCTATTTGTTGAAGTGACTATGCATTATTATTAGCATTAGCAATAGCATTAGAGATTACTGATGAAAGGGGTTTTTGATTGAACATGGCAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCGAACTCACCAAAACTGAGAGACATTAATATCAAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTTCCCTTTTTTTTGTTCAATACTTGTAGTTTACAGTTTATTGAGATGGGTTAGTTAGGAACAGATTAATTCCATTGAATTTTGCTTGCTTTTATTGGTATCTCTACTGATGGCTTATCCCTCCCTTCAGGGATTTCATGTTAAATATTTGATTTTGTTGATTTTACGTCTTATTAGAAGAATGCAGATATATTAAGATT

mRNA sequence

GATTTGTTCTCTCTCCCGGCGTCTCTGCTCCAACTCACCGGCCGGCTGGCCACCGACGACAACTACTTGATCTTCTTGCCCTTCTCCTCTCTCTTGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCGAACTCACCAAAACTGAGAGACATTAATATCAAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTTCCCTTTTTTTTGTTCAATACTTGTAGTTTACAGTTTATTGAGATGGGTTAGTTAGGAACAGATTAATTCCATTGAATTTTGCTTGCTTTTATTGGTATCTCTACTGATGGCTTATCCCTCCCTTCAGGGATTTCATGTTAAATATTTGATTTTGTTGATTTTACGTCTTATTAGAAGAATGCAGATATATTAAGATT

Coding sequence (CDS)

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCGAACTCACCAAAACTGAGAGACATTAA

Protein sequence

MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTERH

Homology

[Close]

BLAST of PI0019549 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-17
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDFELTK 97
            +     L+ VCQHV NTF+ ++ +++  K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYKEQK 109

[Close]

BLAST of PI0019549 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.4e-17
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTERH 101
             PA E  +     LM VCQHV + F+ ++ D++  K  R+
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKASRN 129

[Close]

BLAST of PI0019549 vs. ExPASy Swiss-Prot
Match: Q1RMG8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTERH 101
             PA E  +    +LM VCQHV + F+ ++ +++  K  R+
Sbjct: 89  ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYKDQKASRN 129

[Close]

BLAST of PI0019549 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDFE 94
           L++   NL  VC+HV  TF+  + +F+
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]

BLAST of PI0019549 vs. ExPASy Swiss-Prot
Match: P97304 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN=Polr1d PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER 100
             PA E  +     L+ VCQHV   F+ ++ D++  K  +
Sbjct: 89  ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASK 128

[Close]

BLAST of PI0019549 vs. ExPASy TrEMBL
Match: A0A1S3C5G1 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE 99
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAK 98

[Close]

BLAST of PI0019549 vs. ExPASy TrEMBL
Match: A0A5A7SR68 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00190 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE 99
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAK 98

[Close]

BLAST of PI0019549 vs. ExPASy TrEMBL
Match: A0A5D3BBZ7 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001620 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE 99
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAK 98

[Close]

BLAST of PI0019549 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK 97
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 96

[Close]

BLAST of PI0019549 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER 100
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LT   R
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVR 99

[Close]

BLAST of PI0019549 vs. NCBI nr
Match: KAA0031779.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 7.9e-48
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE 99
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAK 98

[Close]

BLAST of PI0019549 vs. NCBI nr
Match: XP_008457416.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >XP_008457417.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >TYJ97352.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 7.9e-48
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE 99
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAK 98

[Close]

BLAST of PI0019549 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK 97
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LTK
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTK 96

[Close]

BLAST of PI0019549 vs. NCBI nr
Match: XP_004145267.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775.1 hypothetical protein Csa_023153 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK 97
          DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 96

[Close]

BLAST of PI0019549 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 9.7e-46
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER 100
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LT   R
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVR 99

[Close]

BLAST of PI0019549 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.8 bits (338), Expect = 3.8e-32
Identity = 61/93 (65.59%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE 94
          DPAREV KDACQ LM + +HVR+ FDKAV +++
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of PI0019549 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.8 bits (338), Expect = 3.8e-32
Identity = 61/93 (65.59%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE 94
          DPAREV KDACQ LM + +HVR+ FDKAV +++
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of PI0019549 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-18
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE 94
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV +++
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]

BLAST of PI0019549 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 28/93 (30.11%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 5   SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT 
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTS 79

Query: 65  DPA-REVLKDACQNLMVVCQHVRNTFDKAVLDF 93
             +  +    A  +L     +++N F+  V  F
Sbjct: 80  QSSPMQAYNQAINDLDKELDYLKNQFEAEVAKF 112

[Close]

BLAST of PI0019549 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 65 DPAREVLKDACQNLMVV 78
          DP     KD  +NL VV
Sbjct: 80 DP-----KDWFRNLKVV 86

The following BLAST results are available for this feature:

BLAST of PI0019549 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	2.6e-17	45.56	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
P0DPB6	4.4e-17	41.58	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
Q1RMG8	1.7e-16	40.59	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO...	[more]
Q6DRI4	2.2e-16	47.13	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]
P97304	2.9e-16	40.00	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN...	[more]

BLAST of PI0019549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5G1	3.8e-48	96.94	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7SR68	3.8e-48	96.94	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A5D3BBZ7	3.8e-48	96.94	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A0A0LV21	5.5e-47	97.92	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]
A0A0A0LUT5	4.7e-46	92.93	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010...	[more]

BLAST of PI0019549 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031779.1	7.9e-48	96.94	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]	[more]
XP_008457416.1	7.9e-48	96.94	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >...	[more]
XP_038893936.1	3.9e-47	97.92	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_004145267.1	1.1e-46	97.92	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775...	[more]
XP_004147276.2	9.7e-46	92.93	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_01165...	[more]

BLAST of PI0019549 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	3.8e-32	65.59	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	3.8e-32	65.59	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	4.1e-18	67.80	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	3.8e-08	30.11	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.0e-05	36.36	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 12..83 e-value: 1.2E-29 score: 101.8
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 2..95 e-value: 1.3E-34 score: 120.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 8..92
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 1..97
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..97
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 2..85 e-value: 1.18902E-43 score: 135.052

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019549.1	PI0019549.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity