PI0019478 (gene) Melon (PI 482460) v1

Overview


Name	PI0019478
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like 1
Location	chr06: 16121310 .. 16121813 (+)
RNA-Seq Expression	PI0019478
Synteny	PI0019478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAGAGCGAGGTATCGATGAAACCTTAGAAGATCAAACACCGGTTGGAAAGCCAACGGAGGACACAACTGTAATTAGTGCCGTCGTCGCTGCCGCTGTCGATGCTCGGATTGGATCTGCCATGGACGAATTGTTCCGCCGTCTTCAGATTACACCAGCCTTCCAAAATCCGACAGTTTTTAGCAAAATGCACCTTCACACGTCGCCCACGCGCCTGCCCTTTCTGGTCAGAAGCCGCCGGCCGATCCTTCCCTGCCACCCTTATGTTCATCCGCAGCCGCTAGTGACTCCCACACGCCGTTTTATGTTCTGCCCTCTTCGTTCGTCCAGCCACCGTCATTTCAGCCATCCAATCTGTATGCCCTTCCCTCCACTACCCCTATTCCAAACCCTAACAAACATCCAGGGGTTGAGCATCCTCAAATCCACTCAACATTTGAAGTCGGAGAGTCTTCGGCATATTCCAACCCTACCATACCGACCTCTTCTTCGAGAATAG

mRNA sequence

ATGGCATCAGAGCGAGGTATCGATGAAACCTTAGAAGATCAAACACCGGTTGGAAAGCCAACGGAGGACACAACTGTAATTAGTGCCGTCGTCGCTGCCGCTGTCGATGCTCGGATTGGATCTGCCATGGACGAATTGTTCCGCCGTCTTCAGATTACACCAGCCTTCCAAAATCCGACAGTTTTTAGCAAAATGCACCTTCACACGTCGCCCACGCGCCTGCCCTTTCTGGTCAGAAGCCGCCGGCCGATCCTTCCCTGCCACCCTTATGTTCATCCGCAGCCGCTAGTGACTCCCACACGCCGTTTTATGTTCTGCCCTCTTCGTTCGTCCAGCCACCGTCATTTCAGCCATCCAATCTGTATGCCCTTCCCTCCACTACCCCTATTCCAAACCCTAACAAACATCCAGGGGTTGAGCATCCTCAAATCCACTCAACATTTGAAGTCGGAGAGTCTTCGGCATATTCCAACCCTACCATACCGACCTCTTCTTCGAGAATAG

Coding sequence (CDS)

ATGGCATCAGAGCGAGGTATCGATGAAACCTTAGAAGATCAAACACCGGTTGGAAAGCCAACGGAGGACACAACTGTAATTAGTGCCGTCGTCGCTGCCGCTGTCGATGCTCGGATTGGATCTGCCATGGACGAATTGTTCCGCCGTCTTCAGATTACACCAGCCTTCCAAAATCCGACAGTTTTTAGCAAAATGCACCTTCACACGTCGCCCACGCGCCTGCCCTTTCTGGTCAGAAGCCGCCGGCCGATCCTTCCCTGCCACCCTTATGTTCATCCGCAGCCGCTAGTGACTCCCACACGCCGTTTTATGTTCTGCCCTCTTCGTTCGTCCAGCCACCGTCATTTCAGCCATCCAATCTGTATGCCCTTCCCTCCACTACCCCTATTCCAAACCCTAACAAACATCCAGGGGTTGAGCATCCTCAAATCCACTCAACATTTGAAGTCGGAGAGTCTTCGGCATATTCCAACCCTACCATACCGACCTCTTCTTCGAGAATAG

Protein sequence

MASERGIDETLEDQTPVGKPTEDTTVISAVVAAAVDARIGSAMDELFRRLQITPAFQNPTVFSKMHLHTSPTRLPFLVRSRRPILPCHPYVHPQPLVTPTRRFMFCPLRSSSHRHFSHPICMPFPPLPLFQTLTNIQGLSILKSTQHLKSESLRHIPTLPYRPLLRE

Homology

[Close]

BLAST of PI0019478 vs. ExPASy TrEMBL
Match: A0A5A7VJD4 (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00070 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MASERGIDETLEDQTPVGKPTEDTTV-ISAVVAAAVDARIGSAMDELFRRLQITPA 56
          M SE  I+ETL++QT  G  T+ T V ISA+VA AVDA+I +AMDE FRRLQ  PA
Sbjct: 1  MVSEWDIEETLDNQTLDGTLTKGTAVDISAIVAIAVDAQISAAMDEWFRRLQNPPA 56

[Close]

BLAST of PI0019478 vs. ExPASy TrEMBL
Match: A0A5D3C7A8 (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00050 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MASERGIDETLEDQTPVGKPTEDTTV-ISAVVAAAVDARIGSAMDELFRRLQITPA 56
          M SE  I+ETL++QT  G  T+ T V ISA+VA AVDA+I +AMDE FRRLQ  PA
Sbjct: 1  MVSEWDIEETLDNQTLDGTLTKGTAVDISAIVAIAVDAQISAAMDEWFRRLQNPPA 56

[Close]

BLAST of PI0019478 vs. ExPASy TrEMBL
Match: A0A5D3BES5 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00220 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 40/119 (33.61%), Postives = 52/119 (43.70%), Query Frame = 0


Query: 1   MASERGIDETLEDQTPVGKPTEDTTVISAVVAAAVDARIGSAMDELFRRLQITPAFQNPT 60
           M  E+G++ETLE QT VG  TE+T+ I+ V+A  +DA IG+AMDE               
Sbjct: 1   MVLEQGVNETLEGQTLVGNQTEETSAINVVIAVVIDAYIGAAMDE--------------- 60

Query: 61  VFSKMHLHTSPTRLPFLVRSRRPILPCHPYVHPQPLVTPTRRFMFCPLRSSSHRHFSHP 120
                HLH     LP       P+LP + Y  P     P           S+H    HP
Sbjct: 61  ----SHLHVPLYVLPSTSVEPLPLLPSNLYSLPSTDSVP---------NPSNHLEVEHP 91

[Close]

BLAST of PI0019478 vs. NCBI nr
Match: KAA0065569.1 (RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-04
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MASERGIDETLEDQTPVGKPTEDTTV-ISAVVAAAVDARIGSAMDELFRRLQITPA 56
          M SE  I+ETL++QT  G  T+ T V ISA+VA AVDA+I +AMDE FRRLQ  PA
Sbjct: 1  MVSEWDIEETLDNQTLDGTLTKGTAVDISAIVAIAVDAQISAAMDEWFRRLQNPPA 56

[Close]

BLAST of PI0019478 vs. NCBI nr
Match: TYK07134.1 (RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-04
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MASERGIDETLEDQTPVGKPTEDTTV-ISAVVAAAVDARIGSAMDELFRRLQITPA 56
          M SE  I+ETL++QT  G  T+ T V ISA+VA AVDA+I +AMDE FRRLQ  PA
Sbjct: 1  MVSEWDIEETLDNQTLDGTLTKGTAVDISAIVAIAVDAQISAAMDEWFRRLQNPPA 56

The following BLAST results are available for this feature:

BLAST of PI0019478 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJD4	3.3e-04	60.71	RNA polymerase II C-terminal domain phosphatase-like 1 OS=Cucumis melo var. maku...	[more]
A0A5D3C7A8	3.3e-04	60.71	RNA polymerase II C-terminal domain phosphatase-like 1 OS=Cucumis melo var. maku...	[more]
A0A5D3BES5	7.4e-04	33.61	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00220 PE...	[more]

BLAST of PI0019478 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065569.1	6.9e-04	60.71	RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa...	[more]
TYK07134.1	6.9e-04	60.71	RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa...	[more]

BLAST of PI0019478 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019478.1	PI0019478.1	mRNA