PI0019426 (gene) Melon (PI 482460) v1

Overview


Name	PI0019426
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr04: 18572235 .. 18574395 (+)
RNA-Seq Expression	PI0019426
Synteny	PI0019426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTACTAGGCGTTCTAGATCTTGTGCGGTATGTATAGTATAAAATTTACAGTTTATTTACTATGTAATTATTTACACTATTATGCGAGTAAAGTAGTGAGTGTGACTATGGGAGGTGGAATAAATGAATCATGCAAACTCAAATAATTAGGCGATGGTTAAAGAAGGAATAATGTAGATTTGTAATTGATAACTCGTATTTTATACAAGTTATTGCGGCCTTTCAGGTAGAATAATGAAGATATAACGCGATAGAAAGAGAATTATTTGTATTTATTAGCGTTGTAAAAGAAAAATTGCATCACACAAGGCAAAAGAGCCAAATCCCTGTTTTACGCGTTTTTATTATGTTTTATGCAGGATTTTAAGCGAACAAAGGATGTCAGGCGAGGAACCCTACGCGAAGAAGCCACAGGCGAGGAAGTATGCGAACAACCAGGCGATCGTGAGGACAGCTATGCGGACCTGAGTTATACCTGACCAACTAGCCTGTGCAAATGGCAGAAAAAGATATCTGCATCGATGCAGAAGGTGACAGAAGCATTAATGAGCTGCCCATACTCTTGTCACATCTCACCTCGCCTATATAAGCCAAGACACCTTCATTATTGGCGGATGCGAAAAATCAGAGAAAACGAATCCACTTTTCTTCCATTTCTCCTTCTCTCTGCCTTGGTGAGAACTAATGTAGAGAGTTATTCATTTCCCCTCAATGTAGAAGGCAAAATCAGAGCCTAAGAATATGAGAAATCATGTTCTGCGGCTTGCTCCCTTTCAATGTTTTCCGCTTTTGTATTTAAGACATATTGCGATGTAATTTACCCGCTCGCAAGGCGGAGTGATTTATTTTAATGAATGTCATTCTTACTTTCATTCATTCATTTCTTGTCTTTCCATTACTTCTAAGTATGCATGATTGTTGTGATTATAATTGTTGTGAAGAAATCGTAAGGTTTTGCATTATGCAGTCCTGCTGGGCAGGCGGCGAAAGAGATAGAGATATTTTCTTTGCCGAACTTATCCTTAGCATATTACTCAGAAATGACAAAATATGTGGCGGAAGCACCGAGAGGTTGCTCGCCTTAATTAAGGGTGGTGAAACATAATACAAAACTATGCGATTAGTTAGAAATTATCCTTTAACTTTGTGTATTTGGATCCCGAAAGGTGAGCAAGTATGGTGGAGGCTCCGAGAGGTTGCTCACCTTAATCCAAAGTTAACGAATAATTTCCAACACCTTTCGCCCAGTTGTAATTATCTCATAAAATACATAGTTCCTACCTATATCATTGTCTAAACATTGAGTTCGCATGTCCATATCGATCCACACACCATGTTCATATTCGTTGACTCTTTCGCATGAGTAATGTAAATAGTTAGATTAAAGAATTTACTTGTAAATAATATTATATACCGCTGAAAGATTAGAACGCCCAGTGAACCTCAGTAACCAAAATCCCTGCGTTCGACCCTGGCTTACCCAGGAAACCTTTTGTTTCGCTTACACTTGGGCGAACAAGAGGAAAACTTGTACTTAAAACGAATCATCACATAGTTGCAACACATAGGTTTAGCTCTGCACCTTTTAACGCAGGACGCTACCTTATCGCCTAAAATTCCAGTCGCAGAACTTAGAGCCAATAATTTCAAATTTACGAAAATGAATTCAAAAAGTAAGAATCAAGTTTTTGGCGCCGTTGCCGGGATTTTGTGTTTATTTTGTTGTGTTTAATTTAGGTGCTAATCTTTTTGCAGAAACTCAGTTTCAGTTGAATCACGTGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAAAGAAAAATTCGTAGAATGGAAAACAACAGAAACGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGATTTGGACAGGCCAATTAGATCCTATGCAGCACCCAATCTTTATAACTTCAGTCTAGGAATCGCCTACCCTGTATTTGGCGAGAACGCCAGGTTTGAAATCAAACCTGTTATGCTTCAGATGATTCAGAACGCCGGACAATTTGGCGGGCATCCTAGGAAGACCCACATGAGCATATAA

mRNA sequence

ATGAATTTACTAGGCGTTCTAGATCTTGTGCGGATTTTAAGCGAACAAAGGATGTCAGGCGAGGAACCCTACGCGAAGAAGCCACAGGCGAGGAATCCTGCTGGGCAGGCGGCGAAAGAGATAGAGATATTTTCTTTGCCGAACTTATCCTTAGCATATTACTCAGAAATGACAAAATATGTGGCGGAAGCACCGAGAGGTGCTAATCTTTTTGCAGAAACTCAGTTTCAGTTGAATCACGTGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAAAGAAAAATTCGTAGAATGGAAAACAACAGAAACGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGATTTGGACAGGCCAATTAGATCCTATGCAGCACCCAATCTTTATAACTTCAGTCTAGGAATCGCCTACCCTGTATTTGGCGAGAACGCCAGGTTTGAAATCAAACCTGTTATGCTTCAGATGATTCAGAACGCCGGACAATTTGGCGGGCATCCTAGGAAGACCCACATGAGCATATAA

Coding sequence (CDS)

ATGAATTTACTAGGCGTTCTAGATCTTGTGCGGATTTTAAGCGAACAAAGGATGTCAGGCGAGGAACCCTACGCGAAGAAGCCACAGGCGAGGAATCCTGCTGGGCAGGCGGCGAAAGAGATAGAGATATTTTCTTTGCCGAACTTATCCTTAGCATATTACTCAGAAATGACAAAATATGTGGCGGAAGCACCGAGAGGTGCTAATCTTTTTGCAGAAACTCAGTTTCAGTTGAATCACGTGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGCGAACAGCCATTCGAACTTGACCCTGAGATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAAAGAAAAATTCGTAGAATGGAAAACAACAGAAACGCTCCTCCGCCGCAAGCTGACCCAGAACCCAATGCCGCCTATATCGCACATGATTTGGACAGGCCAATTAGATCCTATGCAGCACCCAATCTTTATAACTTCAGTCTAGGAATCGCCTACCCTGTATTTGGCGAGAACGCCAGGTTTGAAATCAAACCTGTTATGCTTCAGATGATTCAGAACGCCGGACAATTTGGCGGGCATCCTAGGAAGACCCACATGAGCATATAA

Protein sequence

MNLLGVLDLVRILSEQRMSGEEPYAKKPQARNPAGQAAKEIEIFSLPNLSLAYYSEMTKYVAEAPRGANLFAETQFQLNHVFKPEERENKFMSDSEQPFELDPEIERTFRGNRRRARQRKIRRMENNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMIQNAGQFGGHPRKTHMSI

Homology

[Close]

BLAST of PI0019426 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-19
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 126 NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVML 185
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+F+ GIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 186 QMIQNAGQFGGHPRK 201
            M QNAGQFGGHP +
Sbjct: 62  YMTQNAGQFGGHPHE 76

[Close]

BLAST of PI0019426 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 125 ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVM 184
           +NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+F+ GIAYP F EN RFEIK VM
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 185 LQMIQNAGQFGGHPRK 201
           LQ+IQNAGQF  HPRK
Sbjct: 64  LQIIQNAGQFRRHPRK 79

[Close]

BLAST of PI0019426 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 92  MSDSEQP-FELDPEIERTFRGNRRRARQRK---IRRMENNRNAPPPQADPEPNAAYIAHD 151
           MS+ EQP F +D EIER F+ NRR+ ++R+       +NN+ AP  QA    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 152 LDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMI 189
            DRPIRS  +PNLY F+ GI YP FGEN RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0019426 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 92  MSDSEQP-FELDPEIERTFRGNRRRARQRK---IRRMENNRNAPPPQADPEPNAAYIAHD 151
           MS+ EQP F +D EIER F+ NRR+ ++R+       +NN+ AP  QA    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 152 LDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMI 189
            DRPIRS  +PNLY F+ GI YP FGEN RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0019426 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.4e-14
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 124 MENNRNAPPP---QADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEI 183
           M +N+N   P       + N   IAH+LD PIR+Y + NLY+F+LGIAY VFGENA FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 184 KPVMLQMIQNAGQFGGH 198
           KPVMLQMIQ AGQF G+
Sbjct: 61  KPVMLQMIQKAGQFDGY 77

[Close]

BLAST of PI0019426 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-18
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 126 NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVML 185
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+F+ GIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 186 QMIQNAGQFGGHPRK 201
            M QNAGQFGGHP +
Sbjct: 62  YMTQNAGQFGGHPHE 76

[Close]

BLAST of PI0019426 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 125 ENNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVM 184
           +NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+F+ GIAYP F EN RFEIK VM
Sbjct: 4   QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 185 LQMIQNAGQFGGHPRK 201
           LQ+IQNAGQF  HPRK
Sbjct: 64  LQIIQNAGQFRRHPRK 79

[Close]

BLAST of PI0019426 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-17
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 91  FMSDSEQP-FELDPEIERTFRGNRRRARQRKIRR-MENNRNA-----PPPQADPEPNA-- 150
           +MS+ + P F++DPEIERTFR   R+ +QR+  + +E N +A       PQA    NA  
Sbjct: 1   YMSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANA 60

Query: 151 ----------AYIAHDLDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMIQNA 197
                       +AHD +RP+R YA+PNLYNF+ GI  P F  N RFE+KPVMLQM+Q A
Sbjct: 61  QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAA 120

[Close]

BLAST of PI0019426 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 92  MSDSEQP-FELDPEIERTFRGNRRRARQRK---IRRMENNRNAPPPQADPEPNAAYIAHD 151
           MS+ EQP F +D EIER F+ NRR+ ++R+       +NN+ AP  QA    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 152 LDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMI 189
            DRPIRS  +PNLY F+ GI YP FGEN RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0019426 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 92  MSDSEQP-FELDPEIERTFRGNRRRARQRK---IRRMENNRNAPPPQADPEPNAAYIAHD 151
           MS+ EQP F +D EIER F+ NRR+ ++R+       +NN+ AP  QA    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 152 LDRPIRSYAAPNLYNFSLGIAYPVFGENARFEIKPVMLQMI 189
            DRPIRS  +PNLY F+ GI YP FGEN RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

The following BLAST results are available for this feature:

BLAST of PI0019426 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDN8	5.9e-19	65.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2U7	2.2e-18	65.79	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CAB5	4.6e-16	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UXZ2	4.6e-16	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3BVN1	7.4e-14	58.44	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of PI0019426 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051815.1	1.2e-18	65.33	hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142...	[more]
KAA0062403.1	4.6e-18	65.79	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
WP_217833177.1	5.1e-17	48.00	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
TYK08803.1	9.6e-16	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0060833.1	9.6e-16	52.48	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of PI0019426 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019426.1	PI0019426.1	mRNA