PI0019416 (gene) Melon (PI 482460) v1

Overview


Name	PI0019416
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	sigma factor binding protein 2, chloroplastic
Location	chr08: 5794169 .. 5796948 (-)
RNA-Seq Expression	PI0019416
Synteny	PI0019416

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCTCTCTCCCAATCCCTATATTTTTCCTCACTCTCTCTCCTTTTTTCCCTAAAAACCCTTTTTCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCACCAAACTCTCGACGCCGTTCACCGGCGCAAACCCACCAAGAAAACAAAACAATCCAACAACAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAGTTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAACACGGTATCCAGTGGCGATGACGACGACGGTGCTAGTAATCTTATTGTGAATAATAACAACCCTTCACTTGTTGACGAGGTGCCGGCGGAGGATGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCGCCTCCAGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCTCCCGCGGCGGCGGTTGCCTATGAATCTTATGCAAGGTGAAAATATTTATTGATATTTTAATGTGTGAAAGATCCTTGTATCTCTTTAGTTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAATATATATAATTGTATATTAATTGGGGAGTTAATTGTTAACTTGTGAAAAAAAATATCAAGGTATCAAATTTATGAACACATCTATATCATAATAAAAAGATGTTTGAAATAAATTAAAAGAAATTAGTGGATATTTTAATTTATATGTTATATCTCATTATTTTAAATAGTGTTTTTCTTAATATTTGATTGCGATTTTCCATCACATTTTTATATATGAAGATATATTAATTAATTTTTATACCATGTCATACATTTTACTTTATGAAAAGAACATTAACATGGTGCATCTAGAGTGCACCTATTTTTGTACCCTTACTTCATCCCACACACTGAAAATAAAATTTTTTAAAAAAAAACACCAAGAAGAATTTGTCCGTCAGACAAATTATAATTGCAAAATTAGATGAGATAAACAAAAATGAGTGTATTTTAATGATACAACCATTGATATTTTCATCAAGTAAATTAAAGTTTTTAAGACAGATTTGAGGTTTAAGTTTTCACATTTAAATGTAATTTTTATATCATTCAATTCAATTTTGTTTCTAATGATTGAAAACAAATGATTTTAATCATTTACGAATTACTTTCAACATTTTAGTTAGATGTTGTTTCACTGAATATAAATATAGGTTTTTATGGGTATATGTGTATATATATTGTTTTTCTATTATTATTGCTTGTTTGGATGGAGGGAATTGATTTTTGATTAGCTGGTATCTTCTCATCTTCTTTTAAGATGAGAAATGATATGGGACAAAATGGAGAAATAATATATGGACCCAAACATCAACTTTTTTTCTTTTGTTAGGGTAATCTCACAACAACATGGGTAAAGGGTTGAAATGAAATAATGGAACTGGCTGAGCTATCAAAGATATGATAACTCATATACCTCATGGCCAAACACCCTAATGACCCATAAAAGGGGTCAATGTAATAAACTTTCATATTTGTGTGCTAAAGAATTTTAAATTGTTAGATAGAGATAAAATACAAATGATTATTCAGTACATACCCTCATGCTAATCTTTAAGCTTTTTAAAAAATTGTATATAATACACTCATATGTTATTAAGAAATCGACAATAAAAATTAAACAGAAAAACGTAAATAATAGAAAATTTGTACAAAGAATTATCTGGTTTGCTAATAGCGTGTTGGTTACGTCTATGAACAGAGGAAAAAAGTATTTCATTATTAAAAAAATGCATATCATTTTTTAGATTAAGGGGCACCAGTAGAGTTAGAAGGTTCATATAGCGCATTGCTAGAGCCAAAATTATAGACAACGTAAATAGCATAAACACAAATAAAATTTCGGCTTTGAGCTCCAACAAGAAGTGTGTCACCCCTGAACCCTATCTTGTTAATCAGGTCAATGAAACCTCGTATTTGGTTGTTAGGAGAGCTAAATAACAGAGTGAAAAACTTGAATTCTTATATATCCACTCATATGTACTTCATTGTACTCTCTATATATATAAAGATCCATATGTACAGATATTATCATTTCCATCCAGAAAGTCGTATGCTTTGGAAGAAACTTGTGCATTTTGGAGAGATTTTGATTGATTCAAAAGAAGAACCTACTTCAATTGATATGCCCTTAGGCACGACCATGCATAACATAGAAATCATACTTGGAAAAAGGGGGGATAATTAGTTAGACCAGTAGGCGTTGTAGTAAAACGTAACTGATTGCAAAATAAGAGGGAAAAACAGTTACATTACAATCACCTTCTAGGGAGGTTCATTTGATATCTAAAGAAAATTGCTCAGCAACAGTCAAGTATAAGTGGAAAATGTTGGAGTAAACTAGAAAAGCTTCAGTAGAGCCGAATATAAATTTGGGCTAGAGCTTTTGTCTAGTAAGAGAAGTAGTTATGAACCCTGTAGACCATCCTGTGGTGAAGGGAAGATCCCAATTGGTAAAGAAAAACCCATATATAACCTCTTGGGTTATTCTAGGAAGAAGGAGTAGAATAAGGAATAAATATAATTGAAAATTTTATTTCTAACAATTTCTGTTTTTTTTTTCCTAGAAGGTTTAATTTTTGATAGAAAAAAAATACAAAAG

mRNA sequence

CGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCTCTCTCCCAATCCCTATATTTTTCCTCACTCTCTCTCCTTTTTTCCCTAAAAACCCTTTTTCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCACCAAACTCTCGACGCCGTTCACCGGCGCAAACCCACCAAGAAAACAAAACAATCCAACAACAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAGTTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAACACGGTATCCAGTGGCGATGACGACGACGGTGCTAGTAATCTTATTGTGAATAATAACAACCCTTCACTTGTTGACGAGGTGCCGGCGGAGGATGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCGCCTCCAGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCTCCCGCGGCGGCGGTTGCCTATGAATCTTATGCAAGGTGAAAATATTTATTGATATTTTAATGTGTGAAAGATCCTTGTATCTCTTTAGTTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAATATATATAATTGTATATTAATTGGGGAGTTAATTGTTAACTTGTGAAAAAAAATATCAAGGTATCAAATTTATGAACACATCTATATCATAATAAAAAGATGTTTGAAATAAATTAAAAGAAATTAGTGGATATTTTAATTTATATGTTATATCTCATTATTTTAAATAGTGTTTTTCTTAATATTTGATTGCGATTTTCCATCACATTTTTATATATGAAGATATATTAATTAATTTTTATACCATGTCATACATTTTACTTTATGAAAAGAACATTAACATGGTGCATCTAGAGTGCACCTATTTTTGTACCCTTACTTCATCCCACACACTGAAAATAAAATTTTTTAAAAAAAAACACCAAGAAGAATTTGTCCGTCAGACAAATTATAATTGCAAAATTAGATGAGATAAACAAAAATGAGTGTATTTTAATGATACAACCATTGATATTTTCATCAAGTAAATTAAAGTTTTTAAGACAGATTTGAGGTTTAAGTTTTCACATTTAAATGTAATTTTTATATCATTCAATTCAATTTTGTTTCTAATGATTGAAAACAAATGATTTTAATCATTTACGAATTACTTTCAACATTTTAGTTAGATGTTGTTTCACTGAATATAAATATAGGTTTTTATGGGTATATGTGTATATATATTGTTTTTCTATTATTATTGCTTGTTTGGATGGAGGGAATTGATTTTTGATTAGCTGGTATCTTCTCATCTTCTTTTAAGATGAGAAATGATATGGGACAAAATGGAGAAATAATATATGGACCCAAACATCAACTTTTTTTCTTTTGTTAGGGTAATCTCACAACAACATGGGTAAAGGGTTGAAATGAAATAATGGAACTGGCTGAGCTATCAAAGATATGATAACTCATATACCTCATGGCCAAACACCCTAATGACCCATAAAAGGGGTCAATGTAATAAACTTTCATATTTGTGTGCTAAAGAATTTTAAATTGTTAGATAGAGATAAAATACAAATGATTATTCAGTACATACCCTCATGCTAATCTTTAAGCTTTTTAAAAAATTGTATATAATACACTCATATGTTATTAAGAAATCGACAATAAAAATTAAACAGAAAAACGTAAATAATAGAAAATTTGTACAAAGAATTATCTGGTTTGCTAATAGCGTGTTGGTTACGTCTATGAACAGAGGAAAAAAGTATTTCATTATTAAAAAAATGCATATCATTTTTTAGATTAAGGGGCACCAGTAGAGTTAGAAGGTTCATATAGCGCATTGCTAGAGCCAAAATTATAGACAACGTAAATAGCATAAACACAAATAAAATTTCGGCTTTGAGCTCCAACAAGAAGTGTGTCACCCCTGAACCCTATCTTGTTAATCAGGTCAATGAAACCTCGTATTTGGTTGTTAGGAGAGCTAAATAACAGAGTGAAAAACTTGAATTCTTATATATCCACTCATATGTACTTCATTGTACTCTCTATATATATAAAGATCCATATGTACAGATATTATCATTTCCATCCAGAAAGTCGTATGCTTTGGAAGAAACTTGTGCATTTTGGAGAGATTTTGATTGATTCAAAAGAAGAACCTACTTCAATTGATATGCCCTTAGGCACGACCATGCATAACATAGAAATCATACTTGGAAAAAGGGGGGATAATTAGTTAGACCAGTAGGCGTTGTAGTAAAACGTAACTGATTGCAAAATAAGAGGGAAAAACAGTTACATTACAATCACCTTCTAGGGAGGTTCATTTGATATCTAAAGAAAATTGCTCAGCAACAGTCAAGTATAAGTGGAAAATGTTGGAGTAAACTAGAAAAGCTTCAGTAGAGCCGAATATAAATTTGGGCTAGAGCTTTTGTCTAGTAAGAGAAGTAGTTATGAACCCTGTAGACCATCCTGTGGTGAAGGGAAGATCCCAATTGGTAAAGAAAAACCCATATATAACCTCTTGGGTTATTCTAGGAAGAAGGAGTAGAATAAGGAATAAATATAATTGAAAATTTTATTTCTAACAATTTCTGTTTTTTTTTTCCTAGAAGGTTTAATTTTTGATAGAAAAAAAATACAAAAG

Coding sequence (CDS)

ATGGACGCCGGCGCCGCCACCGGAAACAACCACCAAACTCTCGACGCCGTTCACCGGCGCAAACCCACCAAGAAAACAAAACAATCCAACAACAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAGTTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAACACGGTATCCAGTGGCGATGACGACGACGGTGCTAGTAATCTTATTGTGAATAATAACAACCCTTCACTTGTTGACGAGGTGCCGGCGGAGGATGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCGCCTCCAGTAATCGGAAACTTCTCTGGGTTGCTTCCGGCTCCCGCGGCGGCGGTTGCCTATGAATCTTATGCAAGGTGA

Protein sequence

MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

Homology

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BLAST of PI0019416 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 17 VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSK 76
          V R+ P +K K ++    KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P  
Sbjct: 22 VSRKSPKQKKKTTST--NKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIY 81

Query: 77 FPPS 79
           P S
Sbjct: 82 SPSS 83

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BLAST of PI0019416 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
          MD  ++T   +Q   +    +   K K+ +    KPIKV YISNPM+V+T  S+F  LVQ
Sbjct: 1  MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 61 ELTGQDADFPDPSKFPPSAV 81
          ELTGQDA    PS    +AV
Sbjct: 61 ELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of PI0019416 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 148/164 (90.24%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 148/164 (90.24%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of PI0019416 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.7e-74
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.3e-73
Identity = 145/164 (88.41%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +DDGA+NLIVN+NN SLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 113/164 (68.90%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 3   AGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQEL 62
           AG  TGN+H+ LD VHRRKPTKKTKQ N    KPIKVVYISNPMKVQ SAS FMALVQ+L
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNK--NKPIKVVYISNPMKVQISASGFMALVQQL 64

Query: 63  TGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVPAE 122
           TGQDADFPDPS FPP+AV D AA  D ++NT +  +        ++NNNNPSL  E+P E
Sbjct: 65  TGQDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN--------LMNNNNPSLTVEIPME 124

Query: 123 DD-ILGSFYDDFDDLIFPPPVIGNFSGLLPAPAA-AVAYESYAR 165
           DD  LGSFYDD DDLIFPPPVIGN+  LLPA AA AV YESYAR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of PI0019416 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 148/164 (90.24%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of PI0019416 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 148/164 (90.24%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNTVS G DDDGASNLIVN+NNPSLVD+VP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 145/164 (88.41%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +DDGA+NLIVN+NN SLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. NCBI nr
Match: XP_011653858.1 (sigma factor binding protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 145/164 (88.41%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNNNNPSLVDEVP 120
           ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +DDGA+NLIVN+NN SLVDEVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR 165
           AEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of PI0019416 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 17 VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSK 76
          V R+ P +K K ++    KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P  
Sbjct: 22 VSRKSPKQKKKTTST--NKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIY 81

Query: 77 FPPS 79
           P S
Sbjct: 82 SPSS 83

[Close]

BLAST of PI0019416 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
          MD  ++T   +Q   +    +   K K+ +    KPIKV YISNPM+V+T  S+F  LVQ
Sbjct: 1  MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 61 ELTGQDADFPDPSKFPPSAV 81
          ELTGQDA    PS    +AV
Sbjct: 61 ELTGQDAADLPPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of PI0019416 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	3.0e-07	57.81	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	9.8e-06	43.75	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of PI0019416 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV9	2.3e-74	90.24	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	2.3e-74	90.24	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	8.7e-74	89.63	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L3J8	3.3e-73	88.41	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	1.4e-47	68.90	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of PI0019416 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455708.1	4.7e-74	90.24	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	4.7e-74	90.24	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	1.8e-73	89.63	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAE8649682.1	6.8e-73	88.41	hypothetical protein Csa_012221 [Cucumis sativus]	[more]
XP_011653858.1	6.8e-73	88.41	sigma factor binding protein 2, chloroplastic [Cucumis sativus]	[more]

BLAST of PI0019416 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.2e-08	57.81	sigma factor binding protein 1	[more]
AT2G41180.1	6.9e-07	43.75	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 42..67 e-value: 1.0E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 15..155
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 15..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019416.1	PI0019416.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity