PI0019368 (gene) Melon (PI 482460) v1

Overview


Name	PI0019368
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr10: 11972727 .. 11973224 (+)
RNA-Seq Expression	PI0019368
Synteny	PI0019368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACATACATTATATGTACAATGTACCTATTATACCTCCACTAGTTCACATGGGACGTGTTCAAGTGGAAGAAGCTCAACTCAATGAAGTTTATCATAATGTAGAAGAAGTGCCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATGATGATGCCCACATTTGGAGTAGGATATTGTGATTATAAGGTCGATACAAGATATTATGACTCAGGGGTCGGTCCATCATTTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGAAGGGGACCACGAAGAACATAACAAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCCGGGCAACATAGAGTTTAGAGTCGACGGCGACAACCAACTCGAAATCGATGACGTCGGGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

mRNA sequence

ATGGAGGACATACATTATATGTACAATGTACCTATTATACCTCCACTAGTTCACATGGGACGTGTTCAAGTGGAAGAAGCTCAACTCAATGAAGTTTATCATAATGTAGAAGAAGTGCCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATGATGATGCCCACATTTGGAGTAGGATATTGTGATTATAAGGTCGATACAAGATATTATGACTCAGGGGTCGGTCCATCATTTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGAAGGGGACCACGAAGAACATAACAAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCCGGGCAACATAGAGTTTAGAGTCGACGGCGACAACCAACTCGAAATCGATGACGTCGGGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Coding sequence (CDS)

ATGGAGGACATACATTATATGTACAATGTACCTATTATACCTCCACTAGTTCACATGGGACGTGTTCAAGTGGAAGAAGCTCAACTCAATGAAGTTTATCATAATGTAGAAGAAGTGCCTCCAATGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATGATGATGCCCACATTTGGAGTAGGATATTGTGATTATAAGGTCGATACAAGATATTATGACTCAGGGGTCGGTCCATCATTTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGAAGGGGACCACGAAGAACATAACAAATATATGTACTATGAAGCACCTACAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCCGGGCAACATAGAGTTTAGAGTCGACGGCGACAACCAACTCGAAATCGATGACGTCGGGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Protein sequence

MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMPTFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSDPQEYQQEPENQEEPGNIEFRVDGDNQLEIDDVGVVEHIDFLLSFK

Homology

[Close]

BLAST of PI0019368 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.2e-52
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP +H GRVQVEEA+L+EVYHNVEE+ P TQ Q+QTGYGSP M+MMP
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSP-MIMMP 122

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TFGVGYCD++V+T YYDSGVGPS SYMDVGPSTSYMHGH  D+ EHN+Y+Y+EAPT+VSD
Sbjct: 123 TFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSD 182

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQEE
Sbjct: 183 RQEYQQEPENQEE 194

[Close]

BLAST of PI0019368 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.4e-47
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 7   MYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMPTFGVGY 66
           MY++PI+PP VH GRV+VEE +L+EVYHNVEEVPP TQTQSQTGYGSP MMMMPTFG GY
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSP-MMMMPTFGAGY 60

Query: 67  CDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSDPQEYQQ 126
           CD +V T YYD+G+GP  SYMDVGPS SYMHGH   + EHN+Y+Y+EAP DVSD QEYQQ
Sbjct: 61  CDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQ 120

Query: 127 EPENQEE 134
           EPENQE+
Sbjct: 121 EPENQED 126

[Close]

BLAST of PI0019368 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.5e-46
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP VH G V+VEEA+L++VYHNVEEVP  TQTQSQTGYGSP M MMP
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSP-MTMMP 113

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TF  GYCD++V   YYD+GVGPS SY+DV PSTSYMHGH   + EHN+Y+Y+EAP DVSD
Sbjct: 114 TFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSD 173

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQE+
Sbjct: 174 RQEYQQEPENQED 185

[Close]

BLAST of PI0019368 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.5e-46
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP VH G V+VEEA+L++VYHNVEEVP  TQTQSQTGYGSP M MMP
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSP-MTMMP 125

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TF  GYCD++V   YYD+GVGPS SY+DV PSTSYMHGH   + EHN+Y+Y+EAP DVSD
Sbjct: 126 TFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSD 185

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQE+
Sbjct: 186 RQEYQQEPENQED 197

[Close]

BLAST of PI0019368 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.9e-45
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME IH +Y++PI+PP VH  R +VEEA+L+EVYHNVEEVPP TQTQSQTGYGSP M MMP
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSP-MTMMP 403

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TFG GYCD +V   YYD+ VGP  SYMDVGPSTSYM+GH   + EHN+Y+Y+EAPTDVSD
Sbjct: 404 TFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSD 463

Query: 121 PQEYQQEPENQEE 134
            QEYQQEP+NQE+
Sbjct: 464 RQEYQQEPKNQED 475

[Close]

BLAST of PI0019368 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 6.7e-52
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP +H GRVQVEEA+L+EVYHNVEE+ P TQ Q+QTGYGSP M+MMP
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSP-MIMMP 122

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TFGVGYCD++V+T YYDSGVGPS SYMDVGPSTSYMHGH  D+ EHN+Y+Y+EAPT+VSD
Sbjct: 123 TFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSD 182

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQEE
Sbjct: 183 RQEYQQEPENQEE 194

[Close]

BLAST of PI0019368 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 7   MYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMPTFGVGY 66
           MY++PI+PP VH GRV+VEE +L+EVYHNVEEVPP TQTQSQTGYGSP MMMMPTFG GY
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSP-MMMMPTFGAGY 60

Query: 67  CDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSDPQEYQQ 126
           CD +V T YYD+G+GP  SYMDVGPS SYMHGH   + EHN+Y+Y+EAP DVSD QEYQQ
Sbjct: 61  CDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQ 120

Query: 127 EPENQEE 134
           EPENQE+
Sbjct: 121 EPENQED 126

[Close]

BLAST of PI0019368 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 7.2e-46
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP VH G V+VEEA+L++VYHNVEEVP  TQTQSQTGYGSP M MMP
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSP-MTMMP 125

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TF  GYCD++V   YYD+GVGPS SY+DV PSTSYMHGH   + EHN+Y+Y+EAP DVSD
Sbjct: 126 TFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSD 185

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQE+
Sbjct: 186 RQEYQQEPENQED 197

[Close]

BLAST of PI0019368 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 7.2e-46
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME+IH MY++PI+PP VH G V+VEEA+L++VYHNVEEVP  TQTQSQTGYGSP M MMP
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSP-MTMMP 113

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TF  GYCD++V   YYD+GVGPS SY+DV PSTSYMHGH   + EHN+Y+Y+EAP DVSD
Sbjct: 114 TFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSD 173

Query: 121 PQEYQQEPENQEE 134
            QEYQQEPENQE+
Sbjct: 174 RQEYQQEPENQED 185

[Close]

BLAST of PI0019368 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-45
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 1   MEDIHYMYNVPIIPPLVHMGRVQVEEAQLNEVYHNVEEVPPMTQTQSQTGYGSPMMMMMP 60
           ME IH +Y++PI+PP VH  R +VEEA+L+EVYHNVEEVPP TQTQSQTGYGSP M MMP
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSP-MTMMP 403

Query: 61  TFGVGYCDYKVDTRYYDSGVGPSFSYMDVGPSTSYMHGHEGDHEEHNKYMYYEAPTDVSD 120
           TFG GYCD +V   YYD+ VGP  SYMDVGPSTSYM+GH   + EHN+Y+Y+EAPTDVSD
Sbjct: 404 TFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSD 463

Query: 121 PQEYQQEPENQEE 134
            QEYQQEP+NQE+
Sbjct: 464 RQEYQQEPKNQED 475

The following BLAST results are available for this feature:

BLAST of PI0019368 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLF8	3.2e-52	76.69	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CXX3	5.4e-47	74.80	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSG8	3.5e-46	71.43	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	3.5e-46	71.43	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DJV7	2.9e-45	71.43	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of PI0019368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025972.1	6.7e-52	76.69	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0049532.1	1.1e-46	74.80	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	7.2e-46	71.43	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	7.2e-46	71.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	6.1e-45	71.43	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of PI0019368 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019368.1	PI0019368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance