PI0019262 (gene) Melon (PI 482460) v1

Overview


Name	PI0019262
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 19734482 .. 19734886 (-)
RNA-Seq Expression	PI0019262
Synteny	PI0019262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGTCATTCCTACCATCAACTTTAGCAATCCATCCTTGAACCAATTACTAAACCAATTCACTACTATGAAATTAGAACGAGGAAATTACCTGCTATGGAAAACCCTAGCCATGCCTATTCTTAGAGGCTACAAACTGGAAGAACATCTCACTGGAGAGAGTTTATGTCCATTCAAATTCCTCTTCGTACCTACTGGTGGAGAATCGAGTGTATCTGGCACTGAAGCTACGACTGAAGATGTAGCGTCATCTTCACGAACAGGGTTGATGCAATCGGTGAATCCTGAATTTGAAAAATGGGTCACCACCAATTTACTCTTATTGGAATGGCTTTACAATTCCATGACCCTAGAAATGGATGTACAACTGATGGGTTTCAACAATGCAAAGGATATGTGA

mRNA sequence

ATGGCCAACGTCATTCCTACCATCAACTTTAGCAATCCATCCTTGAACCAATTACTAAACCAATTCACTACTATGAAATTAGAACGAGGAAATTACCTGCTATGGAAAACCCTAGCCATGCCTATTCTTAGAGGCTACAAACTGGAAGAACATCTCACTGGAGAGAGTTTATGTCCATTCAAATTCCTCTTCGTACCTACTGGTGGAGAATCGAGTGTATCTGGCACTGAAGCTACGACTGAAGATGTAGCGTCATCTTCACGAACAGGGTTGATGCAATCGGTGAATCCTGAATTTGAAAAATGGGTCACCACCAATTTACTCTTATTGGAATGGCTTTACAATTCCATGACCCTAGAAATGGATGTACAACTGATGGGTTTCAACAATGCAAAGGATATGTGA

Coding sequence (CDS)

ATGGCCAACGTCATTCCTACCATCAACTTTAGCAATCCATCCTTGAACCAATTACTAAACCAATTCACTACTATGAAATTAGAACGAGGAAATTACCTGCTATGGAAAACCCTAGCCATGCCTATTCTTAGAGGCTACAAACTGGAAGAACATCTCACTGGAGAGAGTTTATGTCCATTCAAATTCCTCTTCGTACCTACTGGTGGAGAATCGAGTGTATCTGGCACTGAAGCTACGACTGAAGATGTAGCGTCATCTTCACGAACAGGGTTGATGCAATCGGTGAATCCTGAATTTGAAAAATGGGTCACCACCAATTTACTCTTATTGGAATGGCTTTACAATTCCATGACCCTAGAAATGGATGTACAACTGATGGGTTTCAACAATGCAAAGGATATGTGA

Protein sequence

MANVIPTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFVPTGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQLMGFNNAKDM

Homology

[Close]

BLAST of PI0019262 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           PT +F+NP LNQ+LNQ TT+KL+RGNYLLWKTLA+PIL+ YKL  HL GES C  K + +
Sbjct: 13  PTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIML 72

Query: 66  PTGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQL 125
            T    S+           SSS T ++ +VNP++E+W+TT+LLLL WLYNSMT E+ +QL
Sbjct: 73  TTQPNESIVENAGEPSQETSSSSTAVV-TVNPKYERWITTDLLLLGWLYNSMTPEVTIQL 132

Query: 126 MGFNNAKDM 135
           MGF NAKD+
Sbjct: 133 MGFTNAKDL 140

[Close]

BLAST of PI0019262 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           PT +F+NP LNQ+LNQ TT+KL+RGNYLLWKTLA+PIL+ YKL  HL GES C  K + +
Sbjct: 88  PTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIML 147

Query: 66  PTGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQL 125
            T    S+           SSS T ++ +VNP++E+W+TT+LLLL WLYNSMT E+ +QL
Sbjct: 148 TTQPNESIVENAGEPSQETSSSSTAVV-TVNPKYERWITTDLLLLGWLYNSMTPEVTIQL 207

Query: 126 MGFNNAKDM 135
           MGF NAKD+
Sbjct: 208 MGFTNAKDL 215

[Close]

BLAST of PI0019262 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.7e-32
Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MANVIP-----TINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGE 60
           MAN +      T NFSNP LNQLLNQ +++KL+RGNYLLWKTLA+PI++ YK E HLTGE
Sbjct: 1   MANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGE 60

Query: 61  SLCPFKFLFVPTG-GESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLY 120
           + CP KF+    G  +S + GT   T+   +SSR+   ++VNP+F++W+T+ LLLL W+Y
Sbjct: 61  NPCPPKFITNQIGESQSEIDGTAEATD--GASSRSTATKTVNPKFDQWLTSYLLLLGWIY 120

Query: 121 NSMTLEMDVQLMGFNNAKDM 135
           NSMT E+  QL GFN AKD+
Sbjct: 121 NSMTAEVAFQLKGFNTAKDL 138

[Close]

BLAST of PI0019262 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           P  +F+NP LNQ+LNQ TT+KL+R NYLLWKTLA+PIL+GYKLE HLTGE  CP KF+ +
Sbjct: 15  PATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTI 74

Query: 66  PTGGESSVSGTE-------ATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMT 125
            +   S+ S TE          + +ASSS +     +NP FE+W+ T+LLLL WLYNSMT
Sbjct: 75  TSSAGSNGSVTEEGDDREQRAPKQIASSSMSA-PAIINPLFEQWIMTDLLLLGWLYNSMT 134

Query: 126 LEMDVQLMGFNNAKDM 135
            ++ VQLMGF NAKD+
Sbjct: 135 PKVAVQLMGFTNAKDL 149

[Close]

BLAST of PI0019262 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 1   MANVI-----PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGE 60
           MAN +      T NFSNP LNQLLNQ +++KL+R NYLLWKTLA+PI++ YK E +LTGE
Sbjct: 1   MANAVSLVESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGE 60

Query: 61  SLCPFKFLFVPTG-GESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLY 120
           + CP KF+   T   +S + GT   T+   +SSR+   ++VNP+F++W+T+ LLLL W+Y
Sbjct: 61  NPCPPKFITNQTAESQSEIDGTAEATD--GASSRSIATKTVNPKFDQWLTSYLLLLGWIY 120

Query: 121 NSMTLEMDVQLMGFNNAKDM 135
           NSMT E+  QL GFN  KD+
Sbjct: 121 NSMTTEVAFQLKGFNTTKDL 138

[Close]

BLAST of PI0019262 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-32
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           PT +F+NP LNQ+LNQ TT+KL+RGNYLLWKTLA+PIL+ YKL  HL GES C  K + +
Sbjct: 13  PTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIML 72

Query: 66  PTGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQL 125
            T    S+           SSS T ++ +VNP++E+W+TT+LLLL WLYNSMT E+ +QL
Sbjct: 73  TTQPNESIVENAGEPSQETSSSSTAVV-TVNPKYERWITTDLLLLGWLYNSMTPEVTIQL 132

Query: 126 MGFNNAKDM 135
           MGF NAKD+
Sbjct: 133 MGFTNAKDL 140

[Close]

BLAST of PI0019262 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-32
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           PT +F+NP LNQ+LNQ TT+KL+RGNYLLWKTLA+PIL+ YKL  HL GES C  K + +
Sbjct: 88  PTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIML 147

Query: 66  PTGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQL 125
            T    S+           SSS T ++ +VNP++E+W+TT+LLLL WLYNSMT E+ +QL
Sbjct: 148 TTQPNESIVENAGEPSQETSSSSTAVV-TVNPKYERWITTDLLLLGWLYNSMTPEVTIQL 207

Query: 126 MGFNNAKDM 135
           MGF NAKD+
Sbjct: 208 MGFTNAKDL 215

[Close]

BLAST of PI0019262 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MANVIP-----TINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGE 60
           MAN +      T NFSNP LNQLLNQ +++KL+RGNYLLWKTLA+PI++ YK E HLTGE
Sbjct: 1   MANAVSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGE 60

Query: 61  SLCPFKFLFVPTG-GESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLY 120
           + CP KF+    G  +S + GT   T+   +SSR+   ++VNP+F++W+T+ LLLL W+Y
Sbjct: 61  NPCPPKFITNQIGESQSEIDGTAEATD--GASSRSTATKTVNPKFDQWLTSYLLLLGWIY 120

Query: 121 NSMTLEMDVQLMGFNNAKDM 135
           NSMT E+  QL GFN AKD+
Sbjct: 121 NSMTAEVAFQLKGFNTAKDL 138

[Close]

BLAST of PI0019262 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-31
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 6   PTINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFV 65
           P  +F+NP LNQ+LNQ TT+KL+R NYLLWKTLA+PIL+GYKLE HLTGE  CP KF+ +
Sbjct: 15  PATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTI 74

Query: 66  PTGGESSVSGTE-------ATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMT 125
            +   S+ S TE          + +ASSS +     +NP FE+W+ T+LLLL WLYNSMT
Sbjct: 75  TSSAGSNGSVTEEGDDREQRAPKQIASSSMSA-PAIINPLFEQWIMTDLLLLGWLYNSMT 134

Query: 126 LEMDVQLMGFNNAKDM 135
            ++ VQLMGF NAKD+
Sbjct: 135 PKVAVQLMGFTNAKDL 149

[Close]

BLAST of PI0019262 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 7   TINFSNPSLNQLLNQFTTMKLERGNYLLWKTLAMPILRGYKLEEHLTGESLCPFKFLFVP 66
           T NFSNP LNQ+LNQ  ++KL+RGNYLLW+TLA+PIL+ YKL+ HLT E+ CP KF+  P
Sbjct: 12  TTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKFIINP 71

Query: 67  TGGESSVSGTEATTEDVASSSRTGLMQSVNPEFEKWVTTNLLLLEWLYNSMTLEMDVQLM 126
           T G SS S T  T               VNP+F++WVT +LLLL W+YNSMT E+ +QLM
Sbjct: 72  TCGASSRSTTTKT---------------VNPKFDQWVTFDLLLLGWMYNSMTPEVALQLM 124

Query: 127 GFNNAKDM 135
           GFN AKD+
Sbjct: 132 GFNTAKDL 124

The following BLAST results are available for this feature:

BLAST of PI0019262 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VPY0	4.0e-32	56.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DY80	4.0e-32	56.59	uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=...	[more]
A0A5D3BVJ1	6.7e-32	54.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VCS1	2.0e-31	55.88	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A1S4DZ26	1.4e-29	52.14	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]

BLAST of PI0019262 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067279.1	8.2e-32	56.59	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]
XP_016900937.1	8.2e-32	56.59	PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]	[more]
TYK02246.1	1.4e-31	54.29	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
KAA0066132.1	4.0e-31	55.88	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
XP_031745012.1	2.6e-30	57.03	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]

BLAST of PI0019262 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019262.1	PI0019262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups