PI0019224 (gene) Melon (PI 482460) v1

Overview


Name	PI0019224
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Twinkle-like protein
Location	chr10: 14314132 .. 14314565 (+)
RNA-Seq Expression	PI0019224
Synteny	PI0019224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGATTCATCAAAATTGGTATCAAAGCTTCTAGGAAGGGACTCATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGATAACCCATGGACCGATGGTGGATTCAACAAAGTAGACATGGCCGAATTTTTTTCCTCATCATGTTGAAGGTCGATTTCGAGGGAATCACCAACAAGAATTCAAAATGAAGGTGGATTTACCTACTTTCAATGGAAAACTAGATATGGAGAAATTTCTTGATTGGATCAAGAATGTTGAAAATTTGTTTAGC

mRNA sequence

CCAAGATTCATCAAAATTGGTATCAAAGCTTCTAGGAAGGGACTCATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGATAACCCATGGACCGATGGTGGATTCAACAAAGTAGACATGGCCGAATTTTTTTCCTCATCATGTTGAAGGTCGATTTCGAGGGAATCACCAACAAGAATTCAAAATGAAGGTGGATTTACCTACTTTCAATGGAAAACTAGATATGGAGAAATTTCTTGATTGGATCAAGAATGTTGAAAATTTGTTTAGC

Coding sequence (CDS)

ATGGTGGGAAAAAACCTAGCCAATGCCACCAAAGGGAAGGGTGTCGATAAGCAACCCTTGGAGTCGGAAATTCTTTCACCAAGGACTTCAACTACACACATGATGGTCGTTGAAGAGACTGTGGGAGACATTAACGGTCGTTTAGCTGATCTGCAACTCACGGTGGAACGCATTGATGAAGAAGATGGTCTCCAATGA

Protein sequence

MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERIDEEDGLQ

Homology

[Close]

BLAST of PI0019224 vs. ExPASy TrEMBL
Match: A0A5A7TYL9 (Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00560 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1   MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERI 59
           MVG+N ANA KGK  D+QP E EIL P+TS   ++ VEET+G +N  L DLQL ++R+
Sbjct: 96  MVGRNPANAGKGKRFDEQPFEQEILWPKTSIALLLAVEETLGGMNTCLVDLQLAIKRV 153

[Close]

BLAST of PI0019224 vs. NCBI nr
Match: KAA0047076.1 (twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1   MVGKNLANATKGKGVDKQPLESEILSPRTSTTHMMVVEETVGDINGRLADLQLTVERI 59
           MVG+N ANA KGK  D+QP E EIL P+TS   ++ VEET+G +N  L DLQL ++R+
Sbjct: 96  MVGRNPANAGKGKRFDEQPFEQEILWPKTSIALLLAVEETLGGMNTCLVDLQLAIKRV 153

The following BLAST results are available for this feature:

BLAST of PI0019224 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYL9	1.3e-07	55.17	Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold131...	[more]

BLAST of PI0019224 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047076.1	2.6e-07	55.17	twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein...	[more]

BLAST of PI0019224 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019224.1	PI0019224.1	mRNA