PI0019149 (gene) Melon (PI 482460) v1

Overview


Name	PI0019149
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr01: 12945314 .. 12945854 (-)
RNA-Seq Expression	PI0019149
Synteny	PI0019149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCCGACGACATGTCAATATCTATTCCAGGCGTATTATTCAATAGTTTGCATGCAGAGGAATGACCGCATGACACTGTCGAAGAATGACTCTCAAATCACTATTGGTTCCTGGATTTCATTCTGGTATCTTGGGCCTAAAAGCTATGATAAGCCAACTACAAAAAAGCAGAAGAAGGCGCCACGTTCCAAATCCATCCAAAATCCTGATGGTTCGAGGATTGAGTCTCGAGAATGGTCTATCAGAGAAAACATGTTCTTTGAAGAACTCGGGATAAGGGATGGTTCGAAAGATGAAACATATTTAGCTGCTTTTCTATCTTGTTGGTTGTGCATTTTCGTGTTTCCGCAAAAGGGCTCATTTCTTTGTCCTGGGGTTTTCAAGATCGCAAGCTTAATGACCGATGGGACTATCTATAGTCTTGCAGTCCCAATTTTAGCAAATATATATCATGGACTAGGTTTGATAACTGAAGCCTCGAATCCAATTAGACGCATGAATTTTCATTTTCCCATGCTAACGTCCATGGCTGGTTAG

mRNA sequence

ATGTCTCCCGACGACATGTCAATATCTATTCCAGGCAGGAATGACCGCATGACACTGTCGAAGAATGACTCTCAAATCACTATTGGTTCCTGGATTTCATTCTGGTATCTTGGGCCTAAAAGCTATGATAAGCCAACTACAAAAAAGCAGAAGAAGGCGCCACGTTCCAAATCCATCCAAAATCCTGATGGTTCGAGGATTGAGTCTCGAGAATGGTCTATCAGAGAAAACATGTTCTTTGAAGAACTCGGGATAAGGGATGGTTCGAAAGATGAAACATATTTAGCTGCTTTTCTATCTTGTTGGTTGTGCATTTTCGTGTTTCCGCAAAAGGGCTCATTTCTTTGTCCTGGGGTTTTCAAGATCGCAAGCTTAATGACCGATGGGACTATCTATAGTCTTGCAGTCCCAATTTTAGCAAATATATATCATGGACTAGGTTTGATAACTGAAGCCTCGAATCCAATTAGACGCATGAATTTTCATTTTCCCATGCTAACGTCCATGGCTGGTTAG

Coding sequence (CDS)

ATGTCTCCCGACGACATGTCAATATCTATTCCAGGCAGGAATGACCGCATGACACTGTCGAAGAATGACTCTCAAATCACTATTGGTTCCTGGATTTCATTCTGGTATCTTGGGCCTAAAAGCTATGATAAGCCAACTACAAAAAAGCAGAAGAAGGCGCCACGTTCCAAATCCATCCAAAATCCTGATGGTTCGAGGATTGAGTCTCGAGAATGGTCTATCAGAGAAAACATGTTCTTTGAAGAACTCGGGATAAGGGATGGTTCGAAAGATGAAACATATTTAGCTGCTTTTCTATCTTGTTGGTTGTGCATTTTCGTGTTTCCGCAAAAGGGCTCATTTCTTTGTCCTGGGGTTTTCAAGATCGCAAGCTTAATGACCGATGGGACTATCTATAGTCTTGCAGTCCCAATTTTAGCAAATATATATCATGGACTAGGTTTGATAACTGAAGCCTCGAATCCAATTAGACGCATGAATTTTCATTTTCCCATGCTAACGTCCATGGCTGGTTAG

Protein sequence

MSPDDMSISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSRIESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLMTDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPMLTSMAG

Homology

[Close]

BLAST of PI0019149 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 128/159 (80.50%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNPDGS+
Sbjct: 196 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSK 255

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF++ASLM
Sbjct: 256 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLM 315

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 316 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 354

[Close]

BLAST of PI0019149 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.8e-67
Identity = 127/159 (79.87%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNP+GS+
Sbjct: 196 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPNGSK 255

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF++ASLM
Sbjct: 256 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLM 315

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 316 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 354

[Close]

BLAST of PI0019149 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 127/159 (79.87%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNPDGS+
Sbjct: 235 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSK 294

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL  GVF++ASLM
Sbjct: 295 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRLGVFRVASLM 354

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 355 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 393

[Close]

BLAST of PI0019149 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 126/159 (79.25%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR T SKNDSQ+TIGSWISFWYLG +SYDKPTT+KQK A RSKS QNPDGS+
Sbjct: 229 SIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGTRSYDKPTTRKQKNASRSKSTQNPDGSK 288

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGI+D  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF+ ASLM
Sbjct: 289 IQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLM 348

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
           T GTIYSLAVP+LANIYHGLGLIT+ASNP  RM+FHFPM
Sbjct: 349 TAGTIYSLAVPVLANIYHGLGLITKASNPTGRMDFHFPM 387

[Close]

BLAST of PI0019149 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 125/159 (78.62%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKP T+KQKKA RSKS QNPDGS+
Sbjct: 59  SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPKTRKQKKASRSKSTQNPDGSK 118

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFP+KGSFL P VF++ASLM
Sbjct: 119 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLM 178

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 179 VAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 217

[Close]

BLAST of PI0019149 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.6e-67
Identity = 128/159 (80.50%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNPDGS+
Sbjct: 196 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSK 255

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF++ASLM
Sbjct: 256 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLM 315

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 316 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 354

[Close]

BLAST of PI0019149 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-66
Identity = 127/159 (79.87%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNP+GS+
Sbjct: 196 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPNGSK 255

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF++ASLM
Sbjct: 256 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLM 315

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 316 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 354

[Close]

BLAST of PI0019149 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 127/159 (79.87%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKPTT+KQKKA RSKS QNPDGS+
Sbjct: 235 SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSK 294

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFPQKGSFL  GVF++ASLM
Sbjct: 295 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRLGVFRVASLM 354

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 355 AAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 393

[Close]

BLAST of PI0019149 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 126/159 (79.25%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR T SKNDSQ+TIGSWISFWYLG +SYDKPTT+KQK A RSKS QNPDGS+
Sbjct: 229 SIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGTRSYDKPTTRKQKNASRSKSTQNPDGSK 288

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGI+D  KDETYLAAFLSCWLC+FVFPQKGSFL PGVF+ ASLM
Sbjct: 289 IQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLM 348

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
           T GTIYSLAVP+LANIYHGLGLIT+ASNP  RM+FHFPM
Sbjct: 349 TAGTIYSLAVPVLANIYHGLGLITKASNPTGRMDFHFPM 387

[Close]

BLAST of PI0019149 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 125/159 (78.62%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 7   SISIPGRNDRMTLSKNDSQITIGSWISFWYLGPKSYDKPTTKKQKKAPRSKSIQNPDGSR 66
           SI    RNDR   SKNDSQ+TIGSWISFWYLG KSYDKP T+KQKKA RSKS QNPDGS+
Sbjct: 59  SIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPKTRKQKKASRSKSTQNPDGSK 118

Query: 67  IESREWSIRENMFFEELGIRDGSKDETYLAAFLSCWLCIFVFPQKGSFLCPGVFKIASLM 126
           I++REWS RE+M F ELGIRD  KDETYLAAFLSCWLC+FVFP+KGSFL P VF++ASLM
Sbjct: 119 IQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLM 178

Query: 127 TDGTIYSLAVPILANIYHGLGLITEASNPIRRMNFHFPM 166
             GTIYSLAVP+LANIYHGLGLIT+ASNPI RM+FHFPM
Sbjct: 179 VAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPM 217

The following BLAST results are available for this feature:

BLAST of PI0019149 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCE5	1.3e-67	80.50	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X8	4.8e-67	79.87	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UGW6	1.8e-66	79.87	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VHW8	1.8e-66	79.25	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	1.6e-65	78.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of PI0019149 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	2.6e-67	80.50	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	1.0e-66	79.87	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	3.8e-66	79.87	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	3.8e-66	79.25	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	3.2e-65	78.62	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]

BLAST of PI0019149 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 79..152 e-value: 5.5E-9 score: 35.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..67
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 26..153
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 26..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019149.1	PI0019149.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane