Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATGTCCTCATTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACATACTGAGCAAGAAACATGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGATGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAGTTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGAGTTTTCAGCCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGACTTCTGAAACCAAGTCGCACCTTCATCTTCTGGGACTAA
mRNA sequence
ATGGAGGAATGTCCTCATTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACATACTGAGCAAGAAACATGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGATGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAGTTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGAGTTTTCAGCCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGACTTCTGAAACCAAGTCGCACCTTCATCTTCTGGGACTAA
Coding sequence (CDS)
ATGGAGGAATGTCCTCATTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACATACTGAGCAAGAAACATGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGATGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAGTTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGAGTTTTCAGCCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGACTTCTGAAACCAAGTCGCACCTTCATCTTCTGGGACTAA
Protein sequence
MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHSKRFQKGSSSGLLKPSRTFIFWD
Homology
BLAST of PI0019143 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. ExPASy TrEMBL
Match:
A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)
HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA+QTVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 261.2 bits (666), Expect = 7.3e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 261.2 bits (666), Expect = 7.3e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 39 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 98
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 99 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 158
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 159 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 218
Query: 181 SSG 183
+SG
Sbjct: 219 TSG 220
BLAST of PI0019143 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 261.2 bits (666), Expect = 7.3e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 261.2 bits (666), Expect = 7.3e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
BLAST of PI0019143 vs. NCBI nr
Match:
KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 261.2 bits (666), Expect = 7.3e-66
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 0
Query: 1 MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQ 60
+EECP P NA+QTVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQ
Sbjct: 40 VEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
EMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGS 180
ESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
Query: 181 SSG 183
+SG
Sbjct: 220 TSG 221
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SMH8 | 3.5e-66 | 74.32 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
A0A5D3CPJ6 | 3.5e-66 | 74.32 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
A0A5A7TU93 | 3.5e-66 | 74.32 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
A0A5A7TWB9 | 3.5e-66 | 74.32 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
A0A5A7V6N0 | 3.5e-66 | 74.32 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016... | [more] |
Match Name | E-value | Identity | Description | |