PI0019135 (gene) Melon (PI 482460) v1

Overview
NamePI0019135
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA-(apurinic or apyrimidinic site) lyase
Locationchr03: 12187063 .. 12187533 (+)
RNA-Seq ExpressionPI0019135
SyntenyPI0019135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGGCTCAAACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCGCCGTCTCCTCCTACCCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCAACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCTTGAGTTCACCGGCGTTGTTGGTTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTTTTCTTCTACATCCTCCTCCTCCTCCGCCGCCGCCAGATTGGCGTTACTTGATTTCCTCAACGCCGGCATCTCCCTGA

mRNA sequence

ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGGCTCAAACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCGCCGTCTCCTCCTACCCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCAACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCTTGAGTTCACCGGCGTTGTTGGTTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTTTTCTTCTACATCCTCCTCCTCCTCCGCCGCCGCCAGATTGGCGTTACTTGATTTCCTCAACGCCGGCATCTCCCTGA

Coding sequence (CDS)

ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGGCTCAAACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCGCCGTCTCCTCCTACCCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCAACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCTTGAGTTCACCGGCGTTGTTGGTTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTTTTCTTCTACATCCTCCTCCTCCTCCGCCGCCGCCAGATTGGCGTTACTTGATTTCCTCAACGCCGGCATCTCCCTGA

Protein sequence

MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPLSSPALLVLISSLSTIFQTATFHIAFTFLLHPPPPPPPPDWRYLISSTPASP
Homology
[Close]
BLAST of PI0019135 vs. ExPASy TrEMBL
Match: A0A5D3CBS3 (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00460 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. ExPASy TrEMBL
Match: A0A5A7UI18 (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00460 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. ExPASy TrEMBL
Match: A0A0A0KIU8 (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis sativus OX=3659 GN=Csa_6G382890 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-46
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKRLKPTPPSTPS KPSPPPPSPPTPQLSHSKPTTVS+HHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRLKPTPPSTPSTKPSPPPPSPPTPQLSHSKPTTVSLHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP 105
           L LLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP
Sbjct: 61  LPLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP 104

[Close]
BLAST of PI0019135 vs. ExPASy TrEMBL
Match: A0A1S4E5X6 (N-glycosylase/DNA lyase OGG1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504082 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. ExPASy TrEMBL
Match: A0A1S3CS00 (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC103504082 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. NCBI nr
Match: KAA0055472.1 (N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. NCBI nr
Match: XP_016903621.1 (PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo] >TYK08955.1 N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. NCBI nr
Match: XP_016903622.1 (PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X3 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

[Close]
BLAST of PI0019135 vs. NCBI nr
Match: XP_004149809.2 (N-glycosylase/DNA lyase OGG1 [Cucumis sativus] >KGN47701.1 hypothetical protein Csa_018253 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKRLKPTPPSTPS KPSPPPPSPPTPQLSHSKPTTVS+HHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRLKPTPPSTPSTKPSPPPPSPPTPQLSHSKPTTVSLHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP 105
           L LLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP
Sbjct: 61  LPLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNP 104

[Close]
BLAST of PI0019135 vs. NCBI nr
Match: XP_008466739.1 (PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60
           MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT
Sbjct: 1   MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKT 60

Query: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 106
           LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL
Sbjct: 61  LTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPL 105

The following BLAST results are available for this feature:
BLAST of PI0019135 vs.
Match NameE-valueIdentityDescription
BLAST of PI0019135 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CBS32.5e-4697.14DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5A7UI182.5e-4697.14DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0KIU82.5e-4697.12DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis sativus OX=3659 GN=Csa_6G38... [more]
A0A1S4E5X62.5e-4697.14N-glycosylase/DNA lyase OGG1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504082 ... [more]
A0A1S3CS002.5e-4697.14DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC10350408... [more]
BLAST of PI0019135 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0055472.15.2e-4697.14N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo var. makuwa][more]
XP_016903621.15.2e-4697.14PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo] >TYK08955.1 N-... [more]
XP_016903622.15.2e-4697.14PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X3 [Cucumis melo][more]
XP_004149809.25.2e-4697.12N-glycosylase/DNA lyase OGG1 [Cucumis sativus] >KGN47701.1 hypothetical protein ... [more]
XP_008466739.15.2e-4697.14PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Cucumis melo][more]
BLAST of PI0019135 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0129048-oxoguanine DNA glycosylase, N-terminalPFAMPF07934OGG_Ncoord: 77..105
e-value: 1.5E-4
score: 21.8
NoneNo IPR availableGENE3D3.30.310.40coord: 49..139
e-value: 6.9E-10
score: 40.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availableSUPERFAMILY55945TATA-box binding protein-likecoord: 72..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0019135.1PI0019135.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006285 base-excision repair, AP site formation
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006289 nucleotide-excision repair
cellular_component GO:0005634 nucleus
molecular_function GO:0034039 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
molecular_function GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity