PI0019032 (gene) Melon (PI 482460) v1

Overview


Name	PI0019032
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 10655923 .. 10656496 (-)
RNA-Seq Expression	PI0019032
Synteny	PI0019032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCGAAGAAGATGCTTGGATGTAATATCCAAGGTTCGCCGACAATAGACTGTCAGATAAAAAACATGAAGAAAACATTCCAGGCCATTGCAGAAATACGCGGGTCGTCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAGAAAGTTGTTCGACAATTGGATTAAGGTAAGTTATTCATTATGAAAATACGATGTTCGTTTATAATAGAAAAAACTAACAATTTATTTAAAAACTTGAACAGAGTCATCCTGCTACGAAGGGCCTCCTAAACAAGTCATTTCCCCATTACAACGACCTGTTTTACGTATTTAGGAAGGATCTTGCGACGGGAGCTCGCGCGGAGACATTCACCAACGTCGGGTCGAATGTGCCTGGAGGGTTCGAAGGATTTTCCGCTGATTATGAAAATGATACGGAGATCCCTATGATGTACAATCATGGACTAGACATGTTGCCTGATGACAAGGCGGGCTCACGCCCCGGTCGCTTGATGGAGGGTAGGACTAGTTCAAGCAGATCGAAGAGAAAGCAAAGAGGCCAGGTAGCATAG

mRNA sequence

ATGCTGGCGAAGAAGATGCTTGGATGTAATATCCAAGGTTCGCCGACAATAGACTGTCAGATAAAAAACATGAAGAAAACATTCCAGGCCATTGCAGAAATACGCGGGTCGTCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAGAAAGTTGTTCGACAATTGGATTAAGAGTCATCCTGCTACGAAGGGCCTCCTAAACAAGTCATTTCCCCATTACAACGACCTGTTTTACGTATTTAGGAAGGATCTTGCGACGGGAGCTCGCGCGGAGACATTCACCAACGTCGGGTCGAATGTGCCTGGAGGGTTCGAAGGATTTTCCGCTGATTATGAAAATGATACGGAGATCCCTATGATGTACAATCATGGACTAGACATGTTGCCTGATGACAAGGCGGGCTCACGCCCCGGTCGCTTGATGGAGGGTAGGACTAGTTCAAGCAGATCGAAGAGAAAGCAAAGAGGCCAGGTAGCATAG

Coding sequence (CDS)

ATGCTGGCGAAGAAGATGCTTGGATGTAATATCCAAGGTTCGCCGACAATAGACTGTCAGATAAAAAACATGAAGAAAACATTCCAGGCCATTGCAGAAATACGCGGGTCGTCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAGAAAGTTGTTCGACAATTGGATTAAGAGTCATCCTGCTACGAAGGGCCTCCTAAACAAGTCATTTCCCCATTACAACGACCTGTTTTACGTATTTAGGAAGGATCTTGCGACGGGAGCTCGCGCGGAGACATTCACCAACGTCGGGTCGAATGTGCCTGGAGGGTTCGAAGGATTTTCCGCTGATTATGAAAATGATACGGAGATCCCTATGATGTACAATCATGGACTAGACATGTTGCCTGATGACAAGGCGGGCTCACGCCCCGGTCGCTTGATGGAGGGTAGGACTAGTTCAAGCAGATCGAAGAGAAAGCAAAGAGGCCAGGTAGCATAG

Protein sequence

MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVPGGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQVA

Homology

[Close]

BLAST of PI0019032 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 9.8e-49
Identity = 96/164 (58.54%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 51  MMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNKSFP+Y++L YVF +D ATG  AETF +VGSN P GG++ F     N
Sbjct: 111 WVRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. ExPASy TrEMBL
Match: A0A5A7SK51 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00260 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 96/164 (58.54%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RGS+CSGFGWNDE KCIIAE++LFDN
Sbjct: 29  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGSACSGFGWNDEEKCIIAEKELFDN 88

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLL K FP+Y++L YVF +D ATG  AETFT+VGSN P GG++ F    EN
Sbjct: 89  WVRSHPAAKGLLKKPFPYYDELTYVFGRDRATGRFAETFTDVGSNEPGGGYDIFDMGDEN 148

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   S+P R  EGRT SS SKRK+  Q
Sbjct: 149 E-DFPPVYSQGIDLSQDDVRASQPSRASEGRTGSSGSKRKRGSQ 191

[Close]

BLAST of PI0019032 vs. ExPASy TrEMBL
Match: A0A5A7V4T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00820 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 95/164 (57.93%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 27  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 86

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF +VGSN P GG++ F     N
Sbjct: 87  WVRSHPAVKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 146

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SSRSKRK+  Q
Sbjct: 147 E-DFPSVYSQGVDISQDDVRASRPSRASEGRTGSSRSKRKRGSQ 189

[Close]

BLAST of PI0019032 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.3e-48
Identity = 94/164 (57.32%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 51  MMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVPG-GFEGFSADYEN 120
           W++SHP  KGLLNK FP+Y++L YVF +D ATG  AETF +VGSN PG G++ F     N
Sbjct: 111 WVRSHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P++Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPLVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. ExPASy TrEMBL
Match: A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.3e-48
Identity = 94/164 (57.32%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 51  MMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNK FP+Y++L YVF +D ATG  AET+ +VGSN P GG++ F     N
Sbjct: 111 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-48
Identity = 96/164 (58.54%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 51  MMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNKSFP+Y++L YVF +D ATG  AETF +VGSN P GG++ F     N
Sbjct: 111 WVRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. NCBI nr
Match: KAA0062588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-48
Identity = 95/164 (57.93%), Postives = 125/164 (76.22%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 27  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 86

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF +VGSN P GG++ F     N
Sbjct: 87  WVRSHPAVKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 146

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SSRSKRK+  Q
Sbjct: 147 E-DFPSVYSQGVDISQDDVRASRPSRASEGRTGSSRSKRKRGSQ 189

[Close]

BLAST of PI0019032 vs. NCBI nr
Match: KAA0025502.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00362.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-48
Identity = 96/164 (58.54%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RGS+CSGFGWNDE KCIIAE++LFDN
Sbjct: 29  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGSACSGFGWNDEEKCIIAEKELFDN 88

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLL K FP+Y++L YVF +D ATG  AETFT+VGSN P GG++ F    EN
Sbjct: 89  WVRSHPAAKGLLKKPFPYYDELTYVFGRDRATGRFAETFTDVGSNEPGGGYDIFDMGDEN 148

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   S+P R  EGRT SS SKRK+  Q
Sbjct: 149 E-DFPPVYSQGIDLSQDDVRASQPSRASEGRTGSSGSKRKRGSQ 191

[Close]

BLAST of PI0019032 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 94/164 (57.32%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDN
Sbjct: 51  MMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVPG-GFEGFSADYEN 120
           W++SHP  KGLLNK FP+Y++L YVF +D ATG  AETF +VGSN PG G++ F     N
Sbjct: 111 WVRSHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P++Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPLVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-47
Identity = 95/164 (57.93%), Postives = 124/164 (75.61%), Query Frame = 0


Query: 1   MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDN 60
           M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCIIAE++LFDN
Sbjct: 51  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDN 110

Query: 61  WIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVP-GGFEGFSADYEN 120
           W++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF +VGSN P GG++ F     N
Sbjct: 111 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 170

Query: 121 DTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ 164
           + + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Sbjct: 171 E-DFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQ 213

[Close]

BLAST of PI0019032 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 30/92 (32.61%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 5   KMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKS 64
           K LGCN +       ++K +K  +Q+  +++  S SGFGW+ E K   A  +++ +++K+
Sbjct: 55  KRLGCN-KNHKNYMSRLKFLKNLYQSYLDLKRFS-SGFGWDPETKKFTAPDEVWRDYLKA 114

Query: 65  HPATKGLLNKSFPHYNDLFYVFRKDLATGARA 97
           HP  K +  +S  H+ DL  +F   +ATG+ A
Sbjct: 115 HPNHKHMQTESIDHFEDLQIIFGDVVATGSFA 144

[Close]

BLAST of PI0019032 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 33/156 (21.15%), Postives = 65/156 (41.67%), Query Frame = 0


Query: 11  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKG 70
           + G   +  + K ++  F+++  +      GF W+D  + ++A+  ++D ++K HP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 71  LLNKSFPHYNDLFYVFRKDLATGARAETFTN-----------------VGSNVPGGFEGF 130
              KS P Y DL  V+   ++     E+ +                    S V    +G 
Sbjct: 120 FRIKSIPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGS 179

Query: 131 SADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG 150
           S      T  P M  + +D++ D    +R G  +EG
Sbjct: 180 SVTRCRTTWHPPMDRYFIDLMLDQ---ARRGNQIEG 210

[Close]

BLAST of PI0019032 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 33/156 (21.15%), Postives = 65/156 (41.67%), Query Frame = 0


Query: 11  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKG 70
           + G   +  + K ++  F+++  +      GF W+D  + ++A+  ++D ++K HP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 71  LLNKSFPHYNDLFYVFRKDLATGARAETFTN-----------------VGSNVPGGFEGF 130
              KS P Y DL  V+   ++     E+ +                    S V    +G 
Sbjct: 120 FRIKSIPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGS 179

Query: 131 SADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG 150
           S      T  P M  + +D++ D    +R G  +EG
Sbjct: 180 SVTRCRTTWHPPMDRYFIDLMLDQ---ARRGNQIEG 210

[Close]

BLAST of PI0019032 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 15/54 (27.78%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 40  SGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATG 94
           +GF W+     +IA+  +++ +I++HP  +    K+ P Y +L ++F K+ + G
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

The following BLAST results are available for this feature:

BLAST of PI0019032 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6Q9	9.8e-49	58.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SK51	1.3e-48	58.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4T0	1.3e-48	57.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U308	6.3e-48	57.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7USM3	8.3e-48	57.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0019032 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064022.1	2.0e-48	58.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062588.1	2.6e-48	57.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025502.1	2.6e-48	58.54	retrotransposon protein [Cucumis melo var. makuwa] >TYK00362.1 retrotransposon p...	[more]
KAA0050293.1	1.3e-47	57.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066208.1	1.7e-47	57.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0019032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	3.4e-09	32.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	2.9e-05	21.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.9e-05	21.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	4.2e-04	27.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..165
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019032.1	PI0019032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane