PI0019019 (gene) Melon (PI 482460) v1

Overview


Name	PI0019019
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 5779817 .. 5780059 (+)
RNA-Seq Expression	PI0019019
Synteny	PI0019019

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAGGGTGAAAGAGTACCACAAGTACAAGATCCTAATATGACCATTCTTCAAGTCCTTCAAGGAATGATGGAAATGATGAGGGAAGATAGGCAAGAAAGAAGGACACAACAACAAAGAGAAGAACGAGCTTTACAAGAAGATGAGCGAGTGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGGAAATGTGAGAGGAAGAGGAAGAAATAATTTTTTTGCAACGTCGTAA

mRNA sequence

ATGTCACAGGGTGAAAGAGTACCACAAGTACAAGATCCTAATATGACCATTCTTCAAGTCCTTCAAGGAATGATGGAAATGATGAGGGAAGATAGGCAAGAAAGAAGGACACAACAACAAAGAGAAGAACGAGCTTTACAAGAAGATGAGCGAGTGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGGAAATGTGAGAGGAAGAGGAAGAAATAATTTTTTTGCAACGTCGTAA

Coding sequence (CDS)

ATGTCACAGGGTGAAAGAGTACCACAAGTACAAGATCCTAATATGACCATTCTTCAAGTCCTTCAAGGAATGATGGAAATGATGAGGGAAGATAGGCAAGAAAGAAGGACACAACAACAAAGAGAAGAACGAGCTTTACAAGAAGATGAGCGAGTGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGGAAATGTGAGAGGAAGAGGAAGAAATAATTTTTTTGCAACGTCGTAA

Protein sequence

MSQGERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVGGRGNVRGRGRNNFFATS

Homology

[Close]

BLAST of PI0019019 vs. ExPASy TrEMBL
Match: A0A5D3BUV3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00860 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MSQGERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQER 60
          MSQGE VPQ+QDP M +LQ +QG++E+M ED+QERR Q Q EERALQEDE+V+DLVEQER
Sbjct: 1  MSQGEGVPQIQDPTMALLQAIQGIIELMSEDKQERRAQHQIEERALQEDEKVVDLVEQER 60

Query: 61 QVGGRGNVRGRGRNNF 77
          QVG  GN+RGRGRNNF
Sbjct: 61 QVG--GNIRGRGRNNF 74

[Close]

BLAST of PI0019019 vs. ExPASy TrEMBL
Match: A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 7  VPQV-QDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVGGR 66
          VPQV QDPNM ILQ +QGMMEMM EDRQERR QQQREERALQED+   DL EQERQVGGR
Sbjct: 6  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD-AFDLAEQERQVGGR 65

Query: 67 GNVRGRGRNNF 77
           N RGRGRNNF
Sbjct: 66 RNGRGRGRNNF 75

[Close]

BLAST of PI0019019 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPQV-QDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVGGR 66
          VPQV QDPN  ILQ +QGMMEMM EDRQERR QQQREERALQED+   DL EQERQVGGR
Sbjct: 6  VPQVPQDPNTVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD-AFDLAEQERQVGGR 65

Query: 67 GNVRGRGRNNF 77
           N RGRGRNNF
Sbjct: 66 RNGRGRGRNNF 75

[Close]

BLAST of PI0019019 vs. ExPASy TrEMBL
Match: A0A5A7VII0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00510 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 4  GERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVG 63
          GE VP+V DPN+ ILQ +QGM+E+MRE+RQERR QQQRE R  QEDE + DL   ERQ+G
Sbjct: 5  GEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHERQLG 64

Query: 64 GRGNVRGRGRNN 76
          GRGNVRGRGRNN
Sbjct: 65 GRGNVRGRGRNN 76

[Close]

BLAST of PI0019019 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 4  GERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVG 63
          GE VP+V DPN+ ILQ +QGM+E+MRE+RQERR QQQRE R  QEDE + DL   ERQ+G
Sbjct: 5  GEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHERQLG 64

Query: 64 GRGNVRGRGRNN 76
          GRGNVRGRGRNN
Sbjct: 65 GRGNVRGRGRNN 76

[Close]

BLAST of PI0019019 vs. NCBI nr
Match: KAA0033059.1 (uncharacterized protein E6C27_scaffold269G001710 [Cucumis melo var. makuwa] >TYK03473.1 uncharacterized protein E5676_scaffold121G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 6.2e-19
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MSQGERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQER 60
          MSQGE VPQ+QDP M +LQ +QG++E+M ED+QERR Q Q EERALQEDE+V+DLVEQER
Sbjct: 1  MSQGEGVPQIQDPTMALLQAIQGIIELMSEDKQERRAQHQIEERALQEDEKVVDLVEQER 60

Query: 61 QVGGRGNVRGRGRNNF 77
          QVG  GN+RGRGRNNF
Sbjct: 61 QVG--GNIRGRGRNNF 74

[Close]

BLAST of PI0019019 vs. NCBI nr
Match: XP_038902315.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MSQGERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQER 60
          MSQGE VPQVQD NM ILQ +QGMMEMMREDRQERR QQQ   R  QEDE VIDLVEQER
Sbjct: 1  MSQGEEVPQVQDTNMAILQAIQGMMEMMREDRQERRAQQQ---RVSQEDEGVIDLVEQER 60

Query: 61 QVGGRGNVRGRGRNN 76
          Q+ G+GN+RG+GRNN
Sbjct: 61 QLRGKGNMRGKGRNN 72

[Close]

BLAST of PI0019019 vs. NCBI nr
Match: XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 7  VPQV-QDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVGGR 66
          VPQV QDPNM ILQ +QGMMEMM EDRQERR QQQREERALQED+   DL EQERQVGGR
Sbjct: 6  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD-AFDLAEQERQVGGR 65

Query: 67 GNVRGRGRNNF 77
           N RGRGRNNF
Sbjct: 66 RNGRGRGRNNF 75

[Close]

BLAST of PI0019019 vs. NCBI nr
Match: XP_022158838.1 (uncharacterized protein LOC111025303 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPQV-QDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVGGR 66
          VPQV QDPN  ILQ +QGMMEMM EDRQERR QQQREERALQED+   DL EQERQVGGR
Sbjct: 6  VPQVPQDPNTVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD-AFDLAEQERQVGGR 65

Query: 67 GNVRGRGRNNF 77
           N RGRGRNNF
Sbjct: 66 RNGRGRGRNNF 75

[Close]

BLAST of PI0019019 vs. NCBI nr
Match: KAA0051908.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-16
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 4  GERVPQVQDPNMTILQVLQGMMEMMREDRQERRTQQQREERALQEDERVIDLVEQERQVG 63
          GE VP+V DPN+ ILQ +QGM+E+MRE+RQERR QQQRE R  QEDE + DL   ERQ+G
Sbjct: 5  GEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHERQLG 64

Query: 64 GRGNVRGRGRNN 76
          GRGNVRGRGRNN
Sbjct: 65 GRGNVRGRGRNN 76

The following BLAST results are available for this feature:

BLAST of PI0019019 vs.


Match Name	E-value	Identity	Description

BLAST of PI0019019 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUV3	3.0e-19	73.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DGU9	2.1e-17	81.69	uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DX75	1.1e-16	80.28	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7VII0	1.8e-16	70.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DRJ1	1.8e-16	70.83	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]

BLAST of PI0019019 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033059.1	6.2e-19	73.68	uncharacterized protein E6C27_scaffold269G001710 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038902315.1	1.8e-18	77.33	LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida]	[more]
XP_022153198.1	4.4e-17	81.69	uncharacterized protein LOC111020753 [Momordica charantia]	[more]
XP_022158838.1	2.2e-16	80.28	uncharacterized protein LOC111025303 [Momordica charantia]	[more]
KAA0051908.1	3.7e-16	70.83	putative gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0019019 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019019.1	PI0019019.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding