PI0019014 (gene) Melon (PI 482460) v1

Overview
NamePI0019014
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr10: 21032862 .. 21034236 (-)
RNA-Seq ExpressionPI0019014
SyntenyPI0019014
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTTCCTTTGGTTTCAAAGAACTCTTCACAATAGGTTCGATTCCACTCCGTTACTCCTTTTTTTTTTTTTCATTTTTAAAAATATTTATAATTGTCTAAAAATAGGATTATACGGATTCGTTCAAATGAGTTTTTATATGGAAAGGGAGAAGAAATCAAATCTCAGAGAAGAAATCAAATCTCCAACTTTCAAGTTGATAATACAAACACGATTTCAATTGAGCTATGCTCATTTTGAAGATTAATTGTATTTTTATACAACCTTTCATCTTTGATTAGTTTTAATTAAACTATGTGATAATTATTTGATTTTTTTTATTTTTAAAAACTAATTAAGCATATATACACCATTTACGTATATGGACACCTTTGTTTACCACGATGAATAAAATAAAAGAAAAAAAAACATTTTTTTCCTTTGTTTGTAGAATGTGCATAAGAATTCCAATTTAATGAAGAATATGGTAAAGAATGACAAAACAAGTTTACTTCTAAAATACCAAAAAAAAAAAATTATTTGTGCCATCGTTCGATAAGCATTTGATCTGCTTTTCACCATTTTATTGTTCATGATTCTCACTGTTCTTAAGAAAACATTTGAATATTTAACCAAATTGTAAAAGATATCTTTATTAGGATATATTAAAACAATGGTTTTCAAACGATGTCTTAAGTAACTTTTTAATAGTCTTCGAATCCGTTCAATTTTGTGTCTTATAAATTTATAAGCTTAAAAAAATGATTAATGTATGATATTTAAAAGCTTGTGACATGTTTGGTAACTCATTTATTTTTTATTTTTTTGTTTTTGAAAATTAATTTTTAAAAGGCAAATGGGTTTGATAACTAATTTGCTTTTTTAAACAAGAAACTTGTTTGGGAAATTGAAAATGAAAAAATACATTTTTAAAAAACAGAACAATAATCAATTACCAAACATGGTTTTTACTTTTAATAAACAAAAAATTAAAAACAGAACTTAAAAAACAGAAAAAATAAAATCAAAAAAATTGAAATGGTGGTCTTAATGATTAAAATAAAAATTGGTGTGTTATCTCTCTTTTTTCTTTATTTTTTTAATCAAAATCCGTGTGACAATTATCATAACGATGATAATATTTGTACCTTTTTTTAATTATATTTGTATTTTGTAGATTCAAAACACCAATTAATTGTTGGAGAATACAATAATACAAGATTTGTTGAACGTCGAGGGGGTGGTATGGGAGTGATCCCATATGTGGCTGGTGCTTCATCAGGTCATCATGGAAAGCACAACCACAACCTTGGAAACCGTCATAATAACTACATGGAGTTCATGGTAGTTGGAGTTTCCATCTCTGTTGCAATTTTGTGTAGATTTATATAA

mRNA sequence

ATGGTGGCTTCCTTTGGTTTCAAAGAACTCTTCACAATAGATTCAAAACACCAATTAATTGTTGGAGAATACAATAATACAAGATTTGTTGAACGTCGAGGGGGTGGTATGGGAGTGATCCCATATGTGGCTGGTGCTTCATCAGGTCATCATGGAAAGCACAACCACAACCTTGGAAACCGTCATAATAACTACATGGAGTTCATGGTAGTTGGAGTTTCCATCTCTGTTGCAATTTTGTGTAGATTTATATAA

Coding sequence (CDS)

ATGGTGGCTTCCTTTGGTTTCAAAGAACTCTTCACAATAGATTCAAAACACCAATTAATTGTTGGAGAATACAATAATACAAGATTTGTTGAACGTCGAGGGGGTGGTATGGGAGTGATCCCATATGTGGCTGGTGCTTCATCAGGTCATCATGGAAAGCACAACCACAACCTTGGAAACCGTCATAATAACTACATGGAGTTCATGGTAGTTGGAGTTTCCATCTCTGTTGCAATTTTGTGTAGATTTATATAA

Protein sequence

MVASFGFKELFTIDSKHQLIVGEYNNTRFVERRGGGMGVIPYVAGASSGHHGKHNHNLGNRHNNYMEFMVVGVSISVAILCRFI
Homology
[Close]
BLAST of PI0019014 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-27
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0 

Query: 1  MVASFGFKELFTIDSKHQLIVGEYNNTRFVERRGGGMGVIP-YVAGASSGHHGKHNHNLG 60
          M+ASF F +LFTIDSK  + V E+NN+RFVERRGGG GVIP YVAGASSG HGKH+H+LG
Sbjct: 1  MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 60

Query: 61 NRHNNYMEFMVVGVSISVAILCRFI 85
          NR NNY+EF+++GVSIS+A+LCRFI
Sbjct: 61 NRPNNYIEFIIIGVSISIALLCRFI 85

[Close]
BLAST of PI0019014 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0 

Query: 1   MVASFGFKELFTIDSKHQLIVGEYNNTRFVERRGGGMGVIP-YVAGASSGHHGKHNHNLG 60
           M+ASF F +LFTIDSK  + V E+NN+RFVERRGGG GVIP YVAGASSG HGKH+H+LG
Sbjct: 19  MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 78

Query: 61  NRHNNYMEFMVVGVSISVAILCRFI 85
           NR NNY+EF+++GVSIS+A+LCRFI
Sbjct: 79  NRPNNYIEFIIIGVSISIALLCRFI 103

The following BLAST results are available for this feature:
BLAST of PI0019014 vs.
Match NameE-valueIdentityDescription
BLAST of PI0019014 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE65.3e-2772.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1[more]
BLAST of PI0019014 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52709.21.1e-2672.94hypothetical protein Csa_008507 [Cucumis sativus][more]
BLAST of PI0019014 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0019014.1PI0019014.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007129 homologous chromosome pairing at meiosis
biological_process GO:0036297 interstrand cross-link repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005634 nucleus
molecular_function GO:0008409 5'-3' exonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0070336 flap-structured DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004528 phosphodiesterase I activity