PI0018984 (gene) Melon (PI 482460) v1

Overview
NamePI0018984
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionWRKY transcription factor 55
Locationchr10: 12643188 .. 12643391 (-)
RNA-Seq ExpressionPI0018984
SyntenyPI0018984
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCGTCGCTTCTGGGTCGTCCTCTGGCGCTCCGGCAACCGTACGGTACGGAAAAGATGTCGCCGATCAGTTTCCGGTGGTGGACATGGCTGACGTGATGTTCAATTCCGGCACCGGGAGTGGTAATAGTATGGAGTCTATCTTTGCTGCTTACGTGGGGGAGGATCACAAGTGGGAGAAAGACGACAAGAAGAATTAG

mRNA sequence

ATGGATGTCGTCGCTTCTGGGTCGTCCTCTGGCGCTCCGGCAACCGTACGGTACGGAAAAGATGTCGCCGATCAGTTTCCGGTGGTGGACATGGCTGACGTGATGTTCAATTCCGGCACCGGGAGTGGTAATAGTATGGAGTCTATCTTTGCTGCTTACGTGGGGGAGGATCACAAGTGGGAGAAAGACGACAAGAAGAATTAG

Coding sequence (CDS)

ATGGATGTCGTCGCTTCTGGGTCGTCCTCTGGCGCTCCGGCAACCGTACGGTACGGAAAAGATGTCGCCGATCAGTTTCCGGTGGTGGACATGGCTGACGTGATGTTCAATTCCGGCACCGGGAGTGGTAATAGTATGGAGTCTATCTTTGCTGCTTACGTGGGGGAGGATCACAAGTGGGAGAAAGACGACAAGAAGAATTAG

Protein sequence

MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKWEKDDKKN
Homology
[Close]
BLAST of PI0018984 vs. ExPASy TrEMBL
Match: A0A0A0KQP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223060 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1  MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKW 60
          MDVV SGS+SGAP+TVRYGKDV DQF VVDMADVMFNSGT S NSM+SIFAAYVGEDHKW
Sbjct: 1  MDVVGSGSTSGAPSTVRYGKDVGDQFAVVDMADVMFNSGTSSSNSMDSIFAAYVGEDHKW 60

Query: 61 EKDDKK 67
          EK+DKK
Sbjct: 61 EKEDKK 66

[Close]
BLAST of PI0018984 vs. ExPASy TrEMBL
Match: A0A1S3C4H9 (WRKY transcription factor 55 OS=Cucumis melo OX=3656 GN=LOC103496757 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKW 60
           MDVV SGS SGAP +VRYGK+V DQF VVDMADVMFNSGT S NSM+SIFAAYV EDHKW
Sbjct: 251 MDVVGSGSKSGAPCSVRYGKEVGDQFAVVDMADVMFNSGTSSSNSMDSIFAAYVAEDHKW 310

Query: 61  EKDDKKN 68
           EK+DKKN
Sbjct: 311 EKEDKKN 317

[Close]
BLAST of PI0018984 vs. ExPASy TrEMBL
Match: A0A3T0I8G3 (WRKY transcription factor 20 OS=Siraitia grosvenorii OX=190515 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 6   SGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGED-HKWEKDD 65
           SG SS  PATVRYGKDVADQFPV+DMAD MFNSG+ S NSM+SIFAA V ED HKWEKDD
Sbjct: 279 SGGSSAGPATVRYGKDVADQFPVLDMADAMFNSGSCSSNSMDSIFAACVAEDHHKWEKDD 338

Query: 66  KKN 68
           KKN
Sbjct: 339 KKN 341

[Close]
BLAST of PI0018984 vs. ExPASy TrEMBL
Match: A0A6J1K6A5 (WRKY transcription factor 55 OS=Cucurbita maxima OX=3661 GN=LOC111491541 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 11  GAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGED---HKWEKDDKKN 68
           G PAT+R  KDV DQFPV+DM D MFNSGTGS NS++SIF A VGE+   HKWEKD+KKN
Sbjct: 233 GGPATIRSSKDVGDQFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEHQHHKWEKDNKKN 292

[Close]
BLAST of PI0018984 vs. ExPASy TrEMBL
Match: A0A6J1FNE7 (WRKY transcription factor 55 OS=Cucurbita moschata OX=3662 GN=LOC111447366 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 11  GAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGED----HKWEKDDKK 68
           G PAT+R  KDV DQFPV+DM D MFNSGTGS NS++SIF A VGE+    HKWEKD+ K
Sbjct: 233 GGPATIRSSKDVGDQFPVLDMVDAMFNSGTGSSNSVDSIFGANVGEEEHQHHKWEKDNTK 292

[Close]
BLAST of PI0018984 vs. NCBI nr
Match: XP_004146468.1 (WRKY transcription factor 55 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKW 60
           MDVV SGS+SGAP+TVRYGKDV DQF VVDMADVMFNSGT S NSM+SIFAAYVGEDHKW
Sbjct: 251 MDVVGSGSTSGAPSTVRYGKDVGDQFAVVDMADVMFNSGTSSSNSMDSIFAAYVGEDHKW 310

Query: 61  EKDDKK 67
           EK+DKK
Sbjct: 311 EKEDKK 316

[Close]
BLAST of PI0018984 vs. NCBI nr
Match: KAE8648055.1 (hypothetical protein Csa_005830 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1  MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKW 60
          MDVV SGS+SGAP+TVRYGKDV DQF VVDMADVMFNSGT S NSM+SIFAAYVGEDHKW
Sbjct: 32 MDVVGSGSTSGAPSTVRYGKDVGDQFAVVDMADVMFNSGTSSSNSMDSIFAAYVGEDHKW 91

Query: 61 EKDDKK 67
          EK+DKK
Sbjct: 92 EKEDKK 97

[Close]
BLAST of PI0018984 vs. NCBI nr
Match: XP_038893186.1 (WRKY transcription factor 55 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 1   MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGED--H 60
           M+VV+SGS+SG PATVRYGKDVADQFPV+DMADVMFNSGT S NSM+SIFAAYV +D  H
Sbjct: 250 MEVVSSGSASGGPATVRYGKDVADQFPVLDMADVMFNSGTNSSNSMDSIFAAYVVDDDHH 309

Query: 61  KWEKDDKKN 68
           KWEKDDKKN
Sbjct: 310 KWEKDDKKN 318

[Close]
BLAST of PI0018984 vs. NCBI nr
Match: XP_008456967.1 (PREDICTED: WRKY transcription factor 55 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MDVVASGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGEDHKW 60
           MDVV SGS SGAP +VRYGK+V DQF VVDMADVMFNSGT S NSM+SIFAAYV EDHKW
Sbjct: 251 MDVVGSGSKSGAPCSVRYGKEVGDQFAVVDMADVMFNSGTSSSNSMDSIFAAYVAEDHKW 310

Query: 61  EKDDKKN 68
           EK+DKKN
Sbjct: 311 EKEDKKN 317

[Close]
BLAST of PI0018984 vs. NCBI nr
Match: AZU90767.1 (WRKY transcription factor 20 [Siraitia grosvenorii])

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 6   SGSSSGAPATVRYGKDVADQFPVVDMADVMFNSGTGSGNSMESIFAAYVGED-HKWEKDD 65
           SG SS  PATVRYGKDVADQFPV+DMAD MFNSG+ S NSM+SIFAA V ED HKWEKDD
Sbjct: 279 SGGSSAGPATVRYGKDVADQFPVLDMADAMFNSGSCSSNSMDSIFAACVAEDHHKWEKDD 338

Query: 66  KKN 68
           KKN
Sbjct: 339 KKN 341

The following BLAST results are available for this feature:
BLAST of PI0018984 vs.
Match NameE-valueIdentityDescription
BLAST of PI0018984 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQP91.3e-2386.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223060 PE=4 SV=1[more]
A0A1S3C4H91.9e-2282.09WRKY transcription factor 55 OS=Cucumis melo OX=3656 GN=LOC103496757 PE=4 SV=1[more]
A0A3T0I8G32.8e-1880.95WRKY transcription factor 20 OS=Siraitia grosvenorii OX=190515 PE=2 SV=1[more]
A0A6J1K6A52.4e-1470.00WRKY transcription factor 55 OS=Cucurbita maxima OX=3661 GN=LOC111491541 PE=4 SV... [more]
A0A6J1FNE71.6e-1367.21WRKY transcription factor 55 OS=Cucurbita moschata OX=3662 GN=LOC111447366 PE=4 ... [more]
BLAST of PI0018984 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146468.12.7e-2386.36WRKY transcription factor 55 [Cucumis sativus][more]
KAE8648055.12.7e-2386.36hypothetical protein Csa_005830 [Cucumis sativus][more]
XP_038893186.13.8e-2282.61WRKY transcription factor 55 [Benincasa hispida][more]
XP_008456967.13.8e-2282.09PREDICTED: WRKY transcription factor 55 [Cucumis melo][more]
AZU90767.15.7e-1880.95WRKY transcription factor 20 [Siraitia grosvenorii][more]
BLAST of PI0018984 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018984.1PI0018984.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding