PI0018960 (gene) Melon (PI 482460) v1

Overview
NamePI0018960
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag/pol protein
Locationchr08: 6448293 .. 6452805 (-)
RNA-Seq ExpressionPI0018960
SyntenyPI0018960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACTGCTCGAGAGATCATGGACTCCTTGCAAGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATACTCTGAAATACATTTATAATGCTCGTATGAATGAGGGAGCTTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAACGAGGTCGTCATCGATGAAGCCAGTCAGGTTAGCTTTAGTTTGGAATCTCTCCCAGAGAGTTTCCTACAATTTAGAAGCAATGTTGTTATGAACAAGATTGCTTATACCCTAACCACCCTTCTAAACGAGCTACAGACTTTCAAGTCTCTGATGAAAATCAAGGGGCAGAAAGGAGAGACAAATGTTGCTACTTCCATAAGAAAGTTCTATAGAGGTTCGACCTTTAGAACTAAGTTTGTGCCTTCTTCATTTAGCACTAAGAAGTGGAAGAAGAAGAAAGGTTGTCAGGGGAATAAAGCTAACCCCGTTGCTGCTAAAACGAGCAAGAAAGCCAAGGCTACAAAGGGAATATGTTTCCATTGCAACCGGGAGGGACATTGGAAGAGAAATTGTCCCAAGTACTTGGCAGAAAAGAAGAAGGCCAAACAAGGTAAATGTGATTTACTAATATTGGAGACTTGTTTAGTGGAAAATGATGATTCAACCTGGATAATAGATTCAGGCGCCACTAACCATGTTTGTTCTTCATTTCTGGGAATTAGTTCCTAGCGACAGTTGGAGACTGGAGAGATGACGATGCGGGTTGGAACTTGGCATGTCGTCTCAGCGGTTGCAATGGGAGGACTTCGACTTTGTTTACAGAAATCTTTTATTTTTTTTGAAAATGTATATGTTATTCCTGATTTAAAAATGAACTTGATTTTTGTAAAATGCTTATTAGAACAATCTCACTCTTTAAATTTCATTGTAAATAAAGTGTTTATTTGCAAAAATGGTGTTGAGATTTGTTCTGCAAAGTTAGAAGATAATCTTTATGTGTTAAGATTGTTAACATCTAACACCTTAATACTGAAATGTTCAAAACTGAAATGTTCAAAACTGCAATGACTCAAAATAAAAGACTTAAAGTTTCTCCAAAAGAAAATGCTCATCTTTGACACCTAAGATTAGCGCACATAAATCTCAATAGGATTGAGAGATTAGTAAAGAATGGACTTCTAAGTGAGTTAGAAGAAAATTCTTTACCTGTATGTGAGTCATGCTTTGAAGGTAAGATGAACAAAATACCTTTTACTGGAAAATGTCATAGGGCTAAAGAACCCCTGGAACTTGTAGGTCCTATGAATGTTAAGGCAAGATGAGGGTTTGAATATTTCATCACTTTTACTGATGATTATTCAAGATATAGGTATGTTTATTTAATGTAGTATAACTCTGAAGCCTTTGAAAAGTTCAAGGAATACAAGGATAAAGTTGAAAATGCATTTAGTAAAACTATTAAAACATTTCGATCTGATCGATGTGGAGAGTATATGGATTTGAAATTCCAAGATTATTTGATGGAATGTGGAATTGTATCCCAACTCTCAACACCTGGTACACCTCAATAGAATGGCGTATCAGAAAGGAAAAATCGAACCTTGTTGGACATGGTTCAGTCGATGATGAGTTGGCTCACTTTCATAATTCATTTTGGGGTTATGCAGTGCAAACTACAGTCTATATTTTGAATTGTGTTCCACTTAAAAGTATTTCTGAAACACCTTTGGAATTATGGAATGGTCGTAAAGGTAGTTTACGTCATTTCAGAATCTGGGGTTGTCCAGCACATGTGTTTGAGACTAATCCTAAGAAATTGGTATCTTGTTCAAAATTATGTTTATTTATTGACTACCCCAAAGGAATCAGAGGTGATTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTATCGACAAACACTACTTTTTTTAGAAGAGAACCACATAAGGGAGCATAAACCGCGCAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTGCTGAACCTTCAACAAGAGTTGTTGAAGACTCTAGTGCATCAATAAAAGTTGTTCATGTCGGTTCATCTACTAGGTCACGTCAACCTCAATCGTTTAGGGAACCTCGATGGAGTGAGAGGGTTACGAACCTGCTTATTCGTTATATGATTTTAACTGAAACCTTAACTGTCATATCTGAAGGCGAAATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGACAAAGGTGAATGGATCAAAGCTATGGATCTTGAATTAGAGTCTATGTACTTCAATTAAGTCTGGGATCTTGTAGATCAACCTGATGGGTGAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAAGGGTGCAGATGGTAAGGTGCAAACCTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCTATTCCAATAATCCTGTCCATTGTTGCATATTATGACTATGAGATTTGGCAAATGAACATTAAGACTGCTTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGTAATAACCAGAAGGATTCATAACTCTAGGTCAAGAGCAAAAGGTTTGCAAGCTTAACCGTTCCATTTATGGATTGAAACAAGCTTCTCAATCTTGGAACATAAGATTTGATACCGCAATAAAATCTTATGGCTTTGATCAAAACATTGATGAACCTTGTGTTTACAAAAGAATCATCAACAATTCAGTAGCTTTCTTAGTTCTATACATATATGATATCCTACTCATCGGGAATGATGTAGATGTACTAACTGATATCAAACAATAGTTGGCAGCTCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTAGGCATTCAGATCTTTAGAGATCGTAAGAACAAAACGCTAGCTTTGTCTCAAGCATCGTATATTGACAAGATCGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCCGGCATGGAGTTACTTTGTCTAATGAACAGCGTCCTAAGACACCTCAAAAGGTTGAGGAAATGAGACAGATCCTCTATGCATCAGTTGTTGGCAGCCTGATGTATGCGATGTTATGTACTAGACCTGACATTTGTTATGCGGTGGGAATAGTCAGTAGATATCAAACTAATCCAGGATTAGCTTACTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAAGGACTACATGCTTGTGTATGGTTCTAACGATTTGATTCTTACAAGATACACAAACTCTAACTTTCAAACTGATAGAGATTCTAGGAAATCTACTTCAGCTTCAGTGTTTACTCTTAACGAAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGTTGACTTCACCATGGAGGCAGAGTATGTCGCAGCTTGTGAAGCTTCCAAAGAGGTTGTCTGACTTAGGAAATTTTTACTGATTTGGATGTTGCTCCAAACATGTCAAAGCCAATTACTCTTTACTATGATAACAGTGGGACTGTGGCTAACTCTAGGGAGCCCAGAAACCACAAGCGTGGAAAACATATTGAACGCAAGTATCACTTGATCCGAGAGATAGTGCATCGAAAGGATTTGATCGTCACACAACTAGCTTCGACACACAACGTTGCTGATCCATTTACAAAGTCCCTCACGGCTAAAGCGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAATCTAGGACAAGTGGGAGATTTACTAGGTGCATATTGTATGCCCTAGTTTCTTGTTTTGTGTACTATTATAGTGCTTTAACTTTTATGTTGTACACCCCACTAGCTTTAGAACAAGTGGAAGATTGTTGGGGTTGATGCACTAAATTTCATGGTCTTGTAGTTTGTAATTTTATTATACAAGTATTTTATTTATCTAATAAAATAAAGTATTTTATTTTATTTGACATTTAGTTGCATTAACCCACAAAACCAATAAACCAACATCCAAGGTTAATACATGTAACCTAAACATGTATGTGGAGACATACAAGTGGATAATGTTTAAGTGATAATGTAAATGGTCTGTAGTAGATGGATAAGGTTCGATACCTTATCCTGGTAACACTGTGAATACGACCTGCTTTGTAGTTGTTACAATTGTTCTAAAGTGCTACAAATGATTTGATCCTAATCATTCATGTCGAGACATTAGAGCGGGGGTATTCTATACAAAGATCGGACCATGAAATGAATAGTCTCTTTTATTAACACCATTACTAGTTGAGACCACATTTCACCAAGATGACCATAGGTGATTTGACCTGAATCCTGAGTGGGTTGTGAATTCCTGTCTATGAAGGCGGTCCTTTGATTTGCATGGGTGAGAGTGGCTTTCGTCGTCGATTCAATATGCCTACCACTTTGGGGATTCGTCTGATTGGGGAGCTGGGAACACAGCTATACAAGAAGGATTCACTCCTTCTCTATAGATAG

mRNA sequence

ATGCTCACTGCTCGAGAGATCATGGACTCCTTGCAAGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATACTCTGAAATACATTTATAATGCTCGTATGAATGAGGGAGCTTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAACGAGGTCGTCATCGATGAAGCCAGTCAGGTTAGCTTTAGTTTGGAATCTCTCCCAGAGAGTTTCCTACAATTTAGAAGCAATGTTGTTATGAACAAGATTGCTTATACCCTAACCACCCTTCTAAACGAGCTACAGACTTTCAAGTCTCTGATGAAAATCAAGGGGCAGAAAGGAGAGACAAATGTTGCTACTTCCATAAGAAAGTTCTATAGAGGTTCGACCTTTAGAACTAAGTTTGTGCCTTCTTCATTTAGCACTAAGAAGTGGAAGAAGAAGAAAGGCGGTCCTTTGATTTGCATGGGTGAGAGTGGCTTTCGTCGTCGATTCAATATGCCTACCACTTTGGGGATTCGTCTGATTGGGGAGCTGGGAACACAGCTATACAAGAAGGATTCACTCCTTCTCTATAGATAG

Coding sequence (CDS)

ATGCTCACTGCTCGAGAGATCATGGACTCCTTGCAAGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATACTCTGAAATACATTTATAATGCTCGTATGAATGAGGGAGCTTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAACGAGGTCGTCATCGATGAAGCCAGTCAGGTTAGCTTTAGTTTGGAATCTCTCCCAGAGAGTTTCCTACAATTTAGAAGCAATGTTGTTATGAACAAGATTGCTTATACCCTAACCACCCTTCTAAACGAGCTACAGACTTTCAAGTCTCTGATGAAAATCAAGGGGCAGAAAGGAGAGACAAATGTTGCTACTTCCATAAGAAAGTTCTATAGAGGTTCGACCTTTAGAACTAAGTTTGTGCCTTCTTCATTTAGCACTAAGAAGTGGAAGAAGAAGAAAGGCGGTCCTTTGATTTGCATGGGTGAGAGTGGCTTTCGTCGTCGATTCAATATGCCTACCACTTTGGGGATTCGTCTGATTGGGGAGCTGGGAACACAGCTATACAAGAAGGATTCACTCCTTCTCTATAGATAG

Protein sequence

MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGGPLICMGESGFRRRFNMPTTLGIRLIGELGTQLYKKDSLLLYR
Homology
[Close]
BLAST of PI0018960 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 325 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 357

[Close]
BLAST of PI0018960 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 207 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 239

[Close]
BLAST of PI0018960 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

[Close]
BLAST of PI0018960 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 137/153 (89.54%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEV 60
           MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMKIKGQKGETNV 120
           VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLNELQTF+SLMKIKGQKGE NV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG 154
           ATS RKF+RGST  TK +PSS   KKWKKKKGG
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGG 240

The following BLAST results are available for this feature:
BLAST of PI0018960 vs.
Match NameE-valueIdentityDescription
BLAST of PI0018960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SMH87.9e-6689.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ67.9e-6689.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
A0A5A7V4M17.9e-6689.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
A0A5A7TU937.9e-6689.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... [more]
A0A5A7TWB97.9e-6689.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... [more]
BLAST of PI0018960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044955.11.6e-6589.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.11.6e-6589.54gag/pol protein [Cucumis melo var. makuwa][more]
TYK14550.11.6e-6589.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0054490.11.6e-6589.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0051952.11.6e-6589.54gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of PI0018960 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..104
e-value: 1.0E-11
score: 44.7
NoneNo IPR availablePANTHERPTHR35317:SF8POLYPROTEIN-LIKE PROTEINcoord: 1..126
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018960.1PI0018960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding