PI0018659 (gene) Melon (PI 482460) v1

Overview


Name	PI0018659
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr06: 19409128 .. 19409585 (-)
RNA-Seq Expression	PI0018659
Synteny	PI0018659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCAGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGAGGAATTATAATAAAGGAAAATCCTGTGATGGATGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGGAGATGCCTCACCCAAAATAATGTCGGTTATGGTGACTGATGTCGATACAAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTCAACATGCTCCTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAATGA

mRNA sequence

ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCAGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGAGGAATTATAATAAAGGAAAATCCTGTGATGGATGAGCACGGTTCGTCTTCTGAACGCTCAAATAGAATGGCGGAGCTTGAAAAGAAGGTCAACATGCTCCTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAATGA

Coding sequence (CDS)

ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCAGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGAGGAATTATAATAAAGGAAAATCCTGTGATGGATGAGCACGGTTCGTCTTCTGAACGCTCAAATAGAATGGCGGAGCTTGAAAAGAAGGTCAACATGCTCCTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAATGA

Protein sequence

MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSNRMAELEKKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

Homology

[Close]

BLAST of PI0018659 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.6e-48
Identity = 110/152 (72.37%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            MDEH S SERSN                     RMAELEKKVNML+K VEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. ExPASy TrEMBL
Match: A0A5A7SKR0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.6e-48
Identity = 110/152 (72.37%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SERSN                     RMAELEKKVNML+KVVEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. ExPASy TrEMBL
Match: A0A5A7U5H1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001620 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.2e-47
Identity = 108/152 (71.05%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVVKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SERSN                     RMAELEKKVNML+K VEE+D+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 109/152 (71.71%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENT 60

Query: 61  VMDEHGSSSERS---------------------NRMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SE S                     NRMAELEKKVNML+KVVEERDYEIA L
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSH +T KN DKGKA++QESQ
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQ 152

[Close]

BLAST of PI0018659 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.6e-46
Identity = 109/152 (71.71%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VMDEHGSSSERS---------------------NRMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH SSS+ S                     NRMAELEKKVNML+KVVEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSH +T KN DKGKA++QESQ
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQ 152

[Close]

BLAST of PI0018659 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 110/152 (72.37%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            MDEH S SERSN                     RMAELEKKVNML+K VEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. NCBI nr
Match: KAA0031754.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 110/152 (72.37%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SERSN                     RMAELEKKVNML+KVVEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 108/152 (71.05%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVVKNIWEQISKPPKGGIVIKENP 60

Query: 61  VMDEHGSSSERSN---------------------RMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SERSN                     RMAELEKKVNML+K VEE+D+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSHT+T KN +KGKAI+QESQ
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQ 152

[Close]

BLAST of PI0018659 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 109/152 (71.71%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENT 60

Query: 61  VMDEHGSSSERS---------------------NRMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH S SE S                     NRMAELEKKVNML+KVVEERDYEIA L
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSH +T KN DKGKA++QESQ
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQ 152

[Close]

BLAST of PI0018659 vs. NCBI nr
Match: KAA0037432.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-46
Identity = 109/152 (71.71%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VMDEHGSSSERS---------------------NRMAELEKKVNMLLKVVEERDYEIASL 120
            +DEH SSS+ S                     NRMAELEKKVNML+KVVEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIISVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAAESSHTYTTKNKDKGKAILQESQ 132
           KNHIESRDAAESSH +T KN DKGKA++QESQ
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQ 152

The following BLAST results are available for this feature:

BLAST of PI0018659 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	8.6e-48	72.37	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7SKR0	8.6e-48	72.37	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U5H1	7.2e-47	71.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UUI7	1.2e-46	71.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CSH0	1.6e-46	71.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of PI0018659 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	1.8e-47	72.37	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0031754.1	1.8e-47	72.37	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050518.1	1.5e-46	71.05	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059562.1	2.6e-46	71.71	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037432.1	3.3e-46	71.71	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0018659 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018659.1	PI0018659.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity