PI0018568 (gene) Melon (PI 482460) v1

Overview


Name	PI0018568
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 412 family
Location	chr01: 14661903 .. 14662256 (+)
RNA-Seq Expression	PI0018568
Synteny	PI0018568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCCGCAAAGATTGATGTGGTTAGCAAGCTACCACCGCCTACTGATGTCAAACCCTTGAGAAGTTTCTTTGGCCATGCTGAATTCTATAGAAGGTTCATCAAAGGATTCTCTCAGATTGCAAAGCCGCTTAGCAATCTATTATATGCCAATCAACCTTATCATTTCGATGATAAATGTAACCAGGCGTTCCAGACTTTGAAAGACATGTTGACCTCAGCGCCTATCCTCACCACTCCTGACTGGTCACAACCATTTGAACTCATGTGTGACGCGAGTGATGCAGCGGTAGGGGCTATGCTGGGTAAAAAGAAAGATAAAGTGATCCACCCGATATACTACCCACTATAG

mRNA sequence

ATGGACCCCGCAAAGATTGATGTGATTGCAAAGCCGCTTAGCAATCTATTATATGCCAATCAACCTTATCATTTCGATGATAAATGTAACCAGGCGTTCCAGACTTTGAAAGACATGTTGACCTCAGCGCCTATCCTCACCACTCCTGACTGGTCACAACCATTTGAACTCATGTGTGACGCGAGTGATGCAGCGGTAGGGGCTATGCTGGGTAAAAAGAAAGATAAAGTGATCCACCCGATATACTACCCACTATAG

Coding sequence (CDS)

ATGGACCCCGCAAAGATTGATGTGATTGCAAAGCCGCTTAGCAATCTATTATATGCCAATCAACCTTATCATTTCGATGATAAATGTAACCAGGCGTTCCAGACTTTGAAAGACATGTTGACCTCAGCGCCTATCCTCACCACTCCTGACTGGTCACAACCATTTGAACTCATGTGTGACGCGAGTGATGCAGCGGTAGGGGCTATGCTGGGTAAAAAGAAAGATAAAGTGATCCACCCGATATACTACCCACTATAG

Protein sequence

MDPAKIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

Homology

[Close]

BLAST of PI0018568 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 5   KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDA 64
           K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD 
Sbjct: 658 KTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV 717

Query: 65  AVGAMLGKKKDKVIHPIYYPL 86
           AVGA+L +K D      YYP+
Sbjct: 718 AVGAVLSQKHD---DDKYYPV 735

[Close]

BLAST of PI0018568 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 5   KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDA 64
           K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD 
Sbjct: 658 KTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV 717

Query: 65  AVGAMLGKKKDKVIHPIYYPL 86
           AVGA+L +K D      YYP+
Sbjct: 718 AVGAVLSQKHD---DDKYYPV 735

[Close]

BLAST of PI0018568 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 5   KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDA 64
           K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD 
Sbjct: 658 KTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV 717

Query: 65  AVGAMLGKKKDKVIHPIYYPL 86
           AVGA+L +K D      YYP+
Sbjct: 718 AVGAVLSQKHD---DDKYYPV 735

[Close]

BLAST of PI0018568 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 5   KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDA 64
           K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD 
Sbjct: 658 KTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV 717

Query: 65  AVGAMLGKKKDKVIHPIYYPL 86
           AVGA+L +K D      YYP+
Sbjct: 718 AVGAVLSQKHD---DDKYYPV 735

[Close]

BLAST of PI0018568 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 5   KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDA 64
           K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD 
Sbjct: 658 KTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV 717

Query: 65  AVGAMLGKKKDKVIHPIYYPL 86
           AVGA+L +K D      YYP+
Sbjct: 718 AVGAVLSQKHD---DDKYYPV 735

[Close]

BLAST of PI0018568 vs. ExPASy TrEMBL
Match: A0A5D3BL15 (Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00400 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           IAKPL  LL A+Q Y+FD K NQAFQTLKD L  API   P+WSQPFELMCDASD AVGA
Sbjct: 59  IAKPLRKLLCADQLYNFDKKRNQAFQTLKDALALAPIFIMPNWSQPFELMCDASDVAVGA 118

Query: 69  MLGKKKDKVIHPIYY 84
           M G+KK+KVIHPIYY
Sbjct: 119 MFGQKKNKVIHPIYY 133

[Close]

BLAST of PI0018568 vs. ExPASy TrEMBL
Match: A0A5A7TY39 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001370 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           I KPLSNLL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGA
Sbjct: 236 ITKPLSNLLCTNQPYNFDEKCNQTYQTLKDALTSAPILITPDWSQQFELMCDVSDVTVGA 295

Query: 69  MLGKKKDKVIHPIY 83
           ML + K+ VI+ IY
Sbjct: 296 MLDQNKNNVIYLIY 309

[Close]

BLAST of PI0018568 vs. ExPASy TrEMBL
Match: A0A5D3BSM7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00440 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           I KPLS LL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGA
Sbjct: 378 ITKPLSKLLCTNQPYNFDEKCNQTYQTLKDALTSAPILITPDWSQQFELMCDVSDVTVGA 437

Query: 69  MLGKKKDKVIHPIY 83
           ML + K+KVI+ IY
Sbjct: 438 MLDQNKNKVIYLIY 451

[Close]

BLAST of PI0018568 vs. ExPASy TrEMBL
Match: A0A5A7UKH8 (Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00810 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.2e-23
Identity = 59/91 (64.84%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1   MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWS 60
           +D  KIDV+         KPL + L   QPY+FD K NQAFQTLKD L  API   PDWS
Sbjct: 19  VDLTKIDVVCKFLPPSDVKPLRSFL--GQPYNFDKKRNQAFQTLKDALALAPIFIMPDWS 78

Query: 61  QPFELMCDASDAAVGAMLGKKKDKVIHPIYY 84
           QPFELMCDASD AVGAM G+KK+KVIHPIYY
Sbjct: 79  QPFELMCDASDVAVGAMFGQKKNKVIHPIYY 107

[Close]

BLAST of PI0018568 vs. ExPASy TrEMBL
Match: A0A5D3DSQ6 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002240 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MDPAKIDVIAKPL-------SNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQ 60
          MD  KIDVI + +          +     Y FD+KC+QAFQTLKDMLT   IL TPDW Q
Sbjct: 1  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60

Query: 61 PFELMCDASDAAVGAMLGKKKDKVIHPIYY 84
          PFELMCD SD  VGA+LG+KKDKVIHPIYY
Sbjct: 61 PFELMCDTSDVTVGAILGQKKDKVIHPIYY 90

[Close]

BLAST of PI0018568 vs. NCBI nr
Match: KAA0047868.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           I KPLSNLL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGA
Sbjct: 236 ITKPLSNLLCTNQPYNFDEKCNQTYQTLKDALTSAPILITPDWSQQFELMCDVSDVTVGA 295

Query: 69  MLGKKKDKVIHPIY 83
           ML + K+ VI+ IY
Sbjct: 296 MLDQNKNNVIYLIY 309

[Close]

BLAST of PI0018568 vs. NCBI nr
Match: TYJ99659.1 (Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           IAKPL  LL A+Q Y+FD K NQAFQTLKD L  API   P+WSQPFELMCDASD AVGA
Sbjct: 59  IAKPLRKLLCADQLYNFDKKRNQAFQTLKDALALAPIFIMPNWSQPFELMCDASDVAVGA 118

Query: 69  MLGKKKDKVIHPIYY 84
           M G+KK+KVIHPIYY
Sbjct: 119 MFGQKKNKVIHPIYY 133

[Close]

BLAST of PI0018568 vs. NCBI nr
Match: TYK02154.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.4e-23
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 9   IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
           I KPLS LL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGA
Sbjct: 378 ITKPLSKLLCTNQPYNFDEKCNQTYQTLKDALTSAPILITPDWSQQFELMCDVSDVTVGA 437

Query: 69  MLGKKKDKVIHPIY 83
           ML + K+KVI+ IY
Sbjct: 438 MLDQNKNKVIYLIY 451

[Close]

BLAST of PI0018568 vs. NCBI nr
Match: KAA0054796.1 (Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 59/91 (64.84%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1   MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWS 60
           +D  KIDV+         KPL + L   QPY+FD K NQAFQTLKD L  API   PDWS
Sbjct: 19  VDLTKIDVVCKFLPPSDVKPLRSFL--GQPYNFDKKRNQAFQTLKDALALAPIFIMPDWS 78

Query: 61  QPFELMCDASDAAVGAMLGKKKDKVIHPIYY 84
           QPFELMCDASD AVGAM G+KK+KVIHPIYY
Sbjct: 79  QPFELMCDASDVAVGAMFGQKKNKVIHPIYY 107

[Close]

BLAST of PI0018568 vs. NCBI nr
Match: XP_020965932.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110266184 [Arachis ipaensis])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 9    IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGA 68
            IAKPLSNLL  + P+ FDD+C QAF+TLK  LT+API+T P W  PFELMCDASD A+GA
Sbjct: 1156 IAKPLSNLLVVSNPFSFDDECKQAFETLKAKLTTAPIITPPSWGLPFELMCDASDFAIGA 1215

Query: 69   MLGKKKDKVIHPIYY 84
            +LG++KDK  H IYY
Sbjct: 1216 VLGQRKDKKHHVIYY 1230

The following BLAST results are available for this feature:

BLAST of PI0018568 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.9e-06	37.04	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.9e-06	37.04	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.9e-06	37.04	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.9e-06	37.04	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.9e-06	37.04	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of PI0018568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL15	1.6e-23	74.67	Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo va...	[more]
A0A5A7TY39	1.6e-23	72.97	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BSM7	2.1e-23	72.97	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UKH8	6.2e-23	64.84	Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo va...	[more]
A0A5D3DSQ6	1.2e-21	61.11	RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of PI0018568 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047868.1	3.4e-23	72.97	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
TYJ99659.1	3.4e-23	74.67	Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var....	[more]
TYK02154.1	4.4e-23	72.97	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0054796.1	1.3e-22	64.84	Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var....	[more]
XP_020965932.1	1.4e-21	66.67	LOW QUALITY PROTEIN: uncharacterized protein LOC110266184 [Arachis ipaensis]	[more]

BLAST of PI0018568 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..66 e-value: 9.4E-9 score: 37.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 25..83 e-value: 4.5E-17 score: 61.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018568.1	PI0018568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding